PDB Chemical Component FMB
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for FMB
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N1 |
C2 |
1.375 |
1.359 |
| N1 |
C6 |
1.395 |
1.350 |
| N1 |
HN1 |
1.021 |
0.970 |
| C2 |
N3 |
1.330 |
1.300 |
| C2 |
H2 |
1.103 |
1.080 |
| N3 |
C4 |
1.349 |
1.356 |
| C4 |
C5 |
1.381 |
1.400 |
| C4 |
C9 |
1.375 |
1.406 |
| C5 |
C6 |
1.409 |
1.415 |
| C5 |
N7 |
1.387 |
1.365 |
| C6 |
O6 |
1.234 |
1.218 |
| N7 |
N8 |
1.311 |
1.401 |
| N7 |
HN7 |
1.021 |
0.970 |
| N8 |
C9 |
1.383 |
1.306 |
| C9 |
C1' |
1.484 |
1.505 |
| C1' |
C2' |
1.524 |
1.540 |
| C1' |
O4' |
1.420 |
1.437 |
| C1' |
H1' |
1.116 |
1.090 |
| C2' |
O2' |
1.414 |
1.429 |
| C2' |
C3' |
1.549 |
1.550 |
| C2' |
H2' |
1.115 |
1.090 |
| O2' |
HO2 |
0.950 |
0.967 |
| C3' |
O3' |
1.444 |
1.429 |
| C3' |
C4' |
1.525 |
1.548 |
| C3' |
H3' |
1.115 |
1.090 |
| O3' |
HO3 |
0.949 |
0.966 |
| C4' |
O4' |
1.447 |
1.443 |
| C4' |
C5' |
1.527 |
1.530 |
| C4' |
H4' |
1.115 |
1.090 |
| C5' |
O5' |
1.440 |
1.430 |
| C5' |
H5'1 |
1.115 |
1.089 |
| C5' |
H5'2 |
1.115 |
1.090 |
| O5' |
HO5 |
0.950 |
0.967 |
Bond Angles for FMB
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C6 |
124.6 |
120.5 |
| C2 |
N1 |
HN1 |
116.9 |
119.8 |
| N1 |
C2 |
N3 |
124.1 |
122.2 |
| N1 |
C2 |
H2 |
119.7 |
118.9 |
| C6 |
N1 |
HN1 |
118.5 |
119.7 |
| N1 |
C6 |
C5 |
111.8 |
118.3 |
| N1 |
C6 |
O6 |
120.0 |
120.9 |
| N3 |
C2 |
H2 |
116.2 |
118.9 |
| C2 |
N3 |
C4 |
111.8 |
121.1 |
| N3 |
C4 |
C5 |
128.4 |
119.2 |
| N3 |
C4 |
C9 |
125.8 |
133.8 |
| C5 |
C4 |
C9 |
105.8 |
107.1 |
| C4 |
C5 |
C6 |
119.3 |
118.6 |
| C4 |
C5 |
N7 |
110.9 |
106.9 |
| C4 |
C9 |
N8 |
105.8 |
108.7 |
| C4 |
C9 |
C1' |
145.1 |
125.7 |
| C6 |
C5 |
N7 |
129.7 |
134.5 |
| C5 |
C6 |
O6 |
128.2 |
120.8 |
| C5 |
N7 |
N8 |
104.1 |
107.9 |
| C5 |
N7 |
HN7 |
130.0 |
126.0 |
| N8 |
N7 |
HN7 |
125.9 |
126.0 |
| N7 |
N8 |
C9 |
113.4 |
109.4 |
| N8 |
C9 |
C1' |
108.3 |
125.6 |
| C9 |
C1' |
C2' |
112.7 |
110.0 |
| C9 |
C1' |
O4' |
108.6 |
109.9 |
| C9 |
C1' |
H1' |
107.2 |
109.8 |
| C2' |
C1' |
O4' |
107.5 |
107.3 |
| C2' |
C1' |
H1' |
108.3 |
109.9 |
| C1' |
C2' |
O2' |
108.9 |
110.5 |
| C1' |
C2' |
C3' |
104.8 |
104.2 |
| C1' |
C2' |
H2' |
115.0 |
110.5 |
| O4' |
C1' |
H1' |
112.5 |
109.9 |
| C1' |
O4' |
C4' |
108.9 |
107.0 |
| O2' |
C2' |
C3' |
115.3 |
110.4 |
| O2' |
C2' |
H2' |
104.5 |
110.4 |
| C2' |
O2' |
HO2 |
108.9 |
106.9 |
| C3' |
C2' |
H2' |
108.7 |
110.6 |
| C2' |
C3' |
O3' |
113.7 |
110.9 |
| C2' |
C3' |
C4' |
104.1 |
102.0 |
| C2' |
C3' |
H3' |
110.4 |
110.9 |
| O3' |
C3' |
C4' |
109.7 |
111.2 |
| O3' |
C3' |
H3' |
104.8 |
110.8 |
| C3' |
O3' |
HO3 |
113.7 |
106.8 |
| C4' |
C3' |
H3' |
114.4 |
110.8 |
| C3' |
C4' |
O4' |
104.9 |
103.6 |
| C3' |
C4' |
C5' |
114.5 |
110.6 |
| C3' |
C4' |
H4' |
109.5 |
110.7 |
| O4' |
C4' |
C5' |
110.1 |
110.6 |
| O4' |
C4' |
H4' |
113.9 |
110.6 |
| C5' |
C4' |
H4' |
104.2 |
110.5 |
| C4' |
C5' |
O5' |
113.6 |
109.5 |
| C4' |
C5' |
H5'1 |
110.7 |
109.5 |
| C4' |
C5' |
H5'2 |
110.7 |
109.5 |
| O5' |
C5' |
H5'1 |
110.7 |
109.4 |
| O5' |
C5' |
H5'2 |
110.7 |
109.4 |
| C5' |
O5' |
HO5 |
113.6 |
106.8 |
| H5'1 |
C5' |
H5'2 |
99.6 |
109.6 |
Torsion Angles for FMB
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
N1 |
C2 |
HN1 |
179.9 |
180.0 |
| C2 |
N1 |
C6 |
C5 |
0.2 |
360.0 |
| C2 |
N1 |
C6 |
O6 |
180.1 |
180.0 |
| N3 |
C2 |
N1 |
H2 |
180.0 |
180.0 |
| N1 |
C2 |
N3 |
C4 |
0.6 |
359.8 |
| C2 |
N1 |
C6 |
HN1 |
180.1 |
180.0 |
| C6 |
N1 |
C2 |
N3 |
359.5 |
360.0 |
| C6 |
N1 |
C2 |
H2 |
179.5 |
180.0 |
| C4 |
C5 |
C6 |
N1 |
359.8 |
0.3 |
| N1 |
C6 |
C5 |
N7 |
180.1 |
180.0 |
| C5 |
C6 |
N1 |
O6 |
180.1 |
180.0 |
| C2 |
N1 |
HN1 |
C6 |
179.9 |
180.0 |
| HN1 |
N1 |
C2 |
N3 |
179.6 |
180.0 |
| HN1 |
N1 |
C2 |
H2 |
359.6 |
0.0 |
| HN1 |
N1 |
C6 |
C5 |
180.2 |
179.9 |
| HN1 |
N1 |
C6 |
O6 |
0.1 |
359.9 |
| N3 |
C2 |
N1 |
C6 |
359.5 |
360.0 |
| N3 |
C2 |
N1 |
HN1 |
179.6 |
180.0 |
| N1 |
C2 |
N3 |
H2 |
180.0 |
180.0 |
| C2 |
N3 |
C4 |
C5 |
359.4 |
0.5 |
| C2 |
N3 |
C4 |
C9 |
179.9 |
179.6 |
| H2 |
C2 |
N1 |
C6 |
179.5 |
180.0 |
| H2 |
C2 |
N1 |
HN1 |
359.6 |
0.0 |
| N1 |
C2 |
H2 |
N3 |
180.0 |
180.0 |
| H2 |
C2 |
N3 |
C4 |
180.6 |
179.8 |
| C4 |
N3 |
C2 |
H2 |
180.6 |
179.8 |
| C5 |
C4 |
N3 |
C9 |
179.5 |
180.9 |
| N3 |
C4 |
C5 |
C6 |
0.4 |
359.5 |
| N3 |
C4 |
C5 |
N7 |
180.1 |
179.7 |
| N3 |
C4 |
C9 |
N8 |
179.7 |
180.4 |
| N3 |
C4 |
C9 |
C1' |
347.1 |
0.7 |
| N1 |
C6 |
C5 |
C4 |
359.8 |
0.3 |
| N3 |
C4 |
C5 |
C9 |
180.4 |
179.3 |
| C5 |
C4 |
C9 |
N8 |
0.2 |
359.6 |
| C5 |
C4 |
C9 |
C1' |
167.5 |
179.9 |
| C6 |
C5 |
C4 |
N7 |
180.3 |
179.8 |
| C4 |
C5 |
C6 |
O6 |
179.9 |
180.3 |
| C4 |
C5 |
N7 |
N8 |
0.3 |
359.8 |
| C4 |
C5 |
N7 |
HN7 |
180.3 |
179.7 |
| N3 |
C4 |
C9 |
C5 |
179.6 |
180.9 |
| C9 |
C4 |
C5 |
C6 |
180.0 |
180.2 |
| C9 |
C4 |
C5 |
N7 |
359.7 |
0.4 |
| N7 |
N8 |
C9 |
C4 |
0.0 |
0.3 |
| N8 |
C9 |
C4 |
C1' |
192.7 |
179.7 |
| C4 |
C9 |
C1' |
C2' |
12.9 |
120.3 |
| C4 |
C9 |
C1' |
O4' |
132.0 |
238.3 |
| C4 |
C9 |
C1' |
H1' |
253.8 |
359.3 |
| C5 |
C6 |
N1 |
HN1 |
180.2 |
179.9 |
| N1 |
C6 |
C5 |
O6 |
179.9 |
180.0 |
| C6 |
C5 |
C4 |
C9 |
180.0 |
180.2 |
| C4 |
C5 |
C6 |
N7 |
179.7 |
180.3 |
| C6 |
C5 |
N7 |
N8 |
180.0 |
180.0 |
| C6 |
C5 |
N7 |
HN7 |
0.0 |
0.0 |
| N7 |
C5 |
C4 |
C9 |
359.7 |
0.4 |
| C4 |
C5 |
N7 |
C6 |
180.3 |
179.7 |
| N7 |
C5 |
C6 |
O6 |
0.2 |
360.0 |
| N8 |
N7 |
C5 |
HN7 |
179.9 |
180.0 |
| C5 |
N7 |
N8 |
C9 |
359.8 |
360.0 |
| O6 |
C6 |
N1 |
HN1 |
0.1 |
359.9 |
| N1 |
C6 |
O6 |
C5 |
180.1 |
180.0 |
| O6 |
C6 |
C5 |
N7 |
0.2 |
360.0 |
| C4 |
C9 |
N8 |
N7 |
0.0 |
0.3 |
| C5 |
N7 |
N8 |
HN7 |
180.1 |
180.0 |
| N7 |
N8 |
C9 |
C1' |
187.6 |
180.0 |
| C5 |
N7 |
HN7 |
N8 |
179.9 |
180.0 |
| HN7 |
N7 |
N8 |
C9 |
179.8 |
180.0 |
| C4 |
C9 |
N8 |
C1' |
172.4 |
180.3 |
| C9 |
N8 |
N7 |
HN7 |
179.8 |
180.0 |
| N8 |
C9 |
C1' |
C2' |
180.0 |
300.7 |
| N8 |
C9 |
C1' |
O4' |
299.1 |
58.6 |
| N8 |
C9 |
C1' |
H1' |
60.9 |
179.6 |
| C4 |
C9 |
C1' |
N8 |
192.9 |
179.7 |
| C2' |
C1' |
C9 |
O4' |
241.0 |
242.1 |
| C2' |
C1' |
C9 |
H1' |
119.1 |
121.0 |
| C9 |
C1' |
C2' |
O2' |
237.3 |
240.4 |
| C9 |
C1' |
C2' |
C3' |
113.5 |
121.7 |
| C9 |
C1' |
C2' |
H2' |
354.2 |
2.9 |
| O4' |
C1' |
C9 |
H1' |
238.2 |
239.0 |
| C9 |
C1' |
O4' |
C4' |
262.2 |
213.9 |
| C9 |
C1' |
C2' |
O4' |
119.7 |
119.6 |
| C9 |
C1' |
C2' |
H1' |
241.5 |
239.0 |
| O4' |
C1' |
C2' |
H1' |
121.8 |
119.4 |
| C2' |
C1' |
O4' |
C4' |
24.5 |
333.5 |
| O2' |
C2' |
C1' |
C3' |
123.9 |
118.7 |
| O2' |
C2' |
C1' |
H2' |
243.2 |
237.5 |
| C1' |
C2' |
O2' |
HO2 |
180.0 |
180.0 |
| C3' |
C2' |
C1' |
H2' |
119.3 |
118.9 |
| C1' |
C2' |
C3' |
O3' |
106.6 |
139.1 |
| C1' |
C2' |
C3' |
C4' |
347.2 |
20.7 |
| C1' |
C2' |
C3' |
H3' |
224.1 |
262.7 |
| C9 |
C1' |
O4' |
C2' |
237.7 |
240.4 |
| C9 |
C1' |
O4' |
H1' |
118.6 |
121.0 |
| C2' |
C1' |
O4' |
H1' |
240.8 |
240.6 |
| O4' |
C1' |
C2' |
O2' |
117.6 |
120.8 |
| O4' |
C1' |
C2' |
C3' |
353.8 |
2.2 |
| O4' |
C1' |
C2' |
H2' |
234.5 |
243.3 |
| C3' |
C4' |
O4' |
C1' |
327.3 |
40.0 |
| C1' |
O4' |
C4' |
C5' |
91.0 |
158.5 |
| C1' |
O4' |
C4' |
H4' |
207.7 |
281.3 |
| C9 |
C1' |
H1' |
C2' |
121.9 |
121.2 |
| C9 |
C1' |
H1' |
O4' |
240.6 |
239.0 |
| C2' |
C1' |
H1' |
O4' |
118.7 |
117.8 |
| H1' |
C1' |
C2' |
O2' |
355.8 |
1.4 |
| H1' |
C1' |
C2' |
C3' |
231.9 |
242.8 |
| H1' |
C1' |
C2' |
H2' |
112.6 |
123.9 |
| H1' |
C1' |
O4' |
C4' |
143.6 |
92.9 |
| O2' |
C2' |
C1' |
O4' |
117.6 |
120.8 |
| O2' |
C2' |
C1' |
H1' |
355.8 |
1.4 |
| C1' |
C2' |
O2' |
C3' |
242.6 |
245.2 |
| C1' |
C2' |
O2' |
H2' |
123.4 |
122.6 |
| C3' |
C2' |
O2' |
H2' |
240.8 |
237.4 |
| O2' |
C2' |
C3' |
O3' |
346.9 |
20.4 |
| O2' |
C2' |
C3' |
C4' |
227.6 |
261.9 |
| O2' |
C2' |
C3' |
H3' |
104.4 |
144.0 |
| C3' |
C2' |
C1' |
O4' |
353.8 |
2.2 |
| C3' |
C2' |
C1' |
H1' |
231.9 |
242.8 |
| C1' |
C2' |
C3' |
O2' |
119.7 |
118.7 |
| C1' |
C2' |
C3' |
H2' |
236.5 |
241.2 |
| O2' |
C2' |
C3' |
H2' |
116.8 |
122.5 |
| C3' |
C2' |
O2' |
HO2 |
297.4 |
294.8 |
| O3' |
C3' |
C2' |
C4' |
119.3 |
118.5 |
| O3' |
C3' |
C2' |
H3' |
242.5 |
236.4 |
| C2' |
C3' |
O3' |
HO3 |
180.0 |
179.9 |
| C4' |
C3' |
C2' |
H3' |
123.2 |
118.0 |
| C2' |
C3' |
C4' |
O4' |
27.1 |
323.2 |
| C2' |
C3' |
C4' |
C5' |
266.2 |
204.6 |
| C2' |
C3' |
C4' |
H4' |
149.7 |
81.8 |
| H2' |
C2' |
C1' |
O4' |
234.5 |
243.3 |
| H2' |
C2' |
C1' |
H1' |
112.6 |
123.9 |
| C1' |
C2' |
H2' |
O2' |
240.7 |
237.4 |
| C1' |
C2' |
H2' |
C3' |
117.1 |
114.9 |
| O2' |
C2' |
H2' |
C3' |
236.4 |
237.5 |
| H2' |
C2' |
O2' |
HO2 |
56.6 |
57.4 |
| H2' |
C2' |
C3' |
O3' |
230.1 |
257.9 |
| H2' |
C2' |
C3' |
C4' |
110.7 |
139.4 |
| H2' |
C2' |
C3' |
H3' |
347.6 |
21.5 |
| HO2 |
O2' |
C2' |
C3' |
297.4 |
294.8 |
| HO2 |
O2' |
C2' |
H2' |
56.6 |
57.4 |
| O3' |
C3' |
C2' |
H2' |
230.1 |
257.9 |
| C2' |
C3' |
O3' |
C4' |
243.9 |
247.2 |
| C2' |
C3' |
O3' |
H3' |
120.7 |
123.6 |
| C4' |
C3' |
O3' |
H3' |
236.7 |
236.4 |
| O3' |
C3' |
C4' |
O4' |
265.0 |
204.9 |
| O3' |
C3' |
C4' |
C5' |
144.2 |
86.3 |
| O3' |
C3' |
C4' |
H4' |
27.6 |
323.5 |
| C1' |
O4' |
C4' |
C3' |
327.3 |
40.0 |
| C4' |
C3' |
C2' |
H2' |
110.7 |
139.4 |
| C2' |
C3' |
C4' |
O3' |
122.0 |
118.3 |
| C2' |
C3' |
C4' |
H3' |
239.5 |
241.9 |
| O3' |
C3' |
C4' |
H3' |
117.5 |
123.6 |
| C4' |
C3' |
O3' |
HO3 |
296.1 |
292.7 |
| O4' |
C4' |
C3' |
C5' |
120.8 |
118.6 |
| O4' |
C4' |
C3' |
H4' |
237.4 |
241.4 |
| C5' |
C4' |
C3' |
H4' |
116.6 |
122.8 |
| C3' |
C4' |
C5' |
O5' |
171.9 |
177.8 |
| C3' |
C4' |
C5' |
H5'1 |
297.2 |
57.9 |
| C3' |
C4' |
C5' |
H5'2 |
46.6 |
297.8 |
| H3' |
C3' |
C2' |
H2' |
347.6 |
21.5 |
| C2' |
C3' |
H3' |
O3' |
237.2 |
236.4 |
| C2' |
C3' |
H3' |
C4' |
116.9 |
112.5 |
| O3' |
C3' |
H3' |
C4' |
239.8 |
236.2 |
| H3' |
C3' |
O3' |
HO3 |
59.4 |
56.3 |
| H3' |
C3' |
C4' |
O4' |
147.6 |
81.3 |
| H3' |
C3' |
C4' |
C5' |
26.8 |
322.7 |
| H3' |
C3' |
C4' |
H4' |
270.2 |
199.9 |
| HO3 |
O3' |
C3' |
C4' |
296.1 |
292.7 |
| HO3 |
O3' |
C3' |
H3' |
59.4 |
56.3 |
| C4' |
O4' |
C1' |
H1' |
143.6 |
92.9 |
| O4' |
C4' |
C3' |
H3' |
147.6 |
81.3 |
| C3' |
C4' |
O4' |
C5' |
236.3 |
241.4 |
| C3' |
C4' |
O4' |
H4' |
119.7 |
118.6 |
| C5' |
C4' |
O4' |
H4' |
243.3 |
237.2 |
| O4' |
C4' |
C5' |
O5' |
54.0 |
63.6 |
| O4' |
C4' |
C5' |
H5'1 |
179.3 |
303.7 |
| O4' |
C4' |
C5' |
H5'2 |
288.7 |
183.5 |
| C5' |
C4' |
C3' |
H3' |
26.8 |
322.7 |
| C3' |
C4' |
C5' |
O4' |
117.9 |
114.2 |
| C3' |
C4' |
C5' |
H4' |
240.4 |
237.1 |
| O4' |
C4' |
C5' |
H4' |
122.6 |
122.8 |
| O5' |
C5' |
C4' |
H5'1 |
234.7 |
119.9 |
| O5' |
C5' |
C4' |
H5'2 |
125.3 |
240.1 |
| C4' |
C5' |
O5' |
HO5 |
180.0 |
180.1 |
| H5'1 |
C5' |
C4' |
H5'2 |
250.6 |
120.1 |
| H4' |
C4' |
C3' |
H3' |
270.2 |
199.9 |
| C3' |
C4' |
H4' |
O4' |
242.9 |
245.7 |
| C3' |
C4' |
H4' |
C5' |
122.9 |
122.9 |
| O4' |
C4' |
H4' |
C5' |
240.0 |
237.1 |
| H4' |
C4' |
C5' |
O5' |
291.4 |
300.8 |
| H4' |
C4' |
C5' |
H5'1 |
56.7 |
180.8 |
| H4' |
C4' |
C5' |
H5'2 |
166.2 |
60.7 |
| O5' |
C5' |
C4' |
H4' |
291.4 |
300.8 |
| C4' |
C5' |
O5' |
H5'1 |
125.3 |
240.0 |
| C4' |
C5' |
O5' |
H5'2 |
234.8 |
120.0 |
| H5'1 |
C5' |
O5' |
H5'2 |
109.5 |
240.0 |
| H5'1 |
C5' |
C4' |
H4' |
56.7 |
180.8 |
| C4' |
C5' |
H5'1 |
O5' |
233.1 |
120.0 |
| C4' |
C5' |
H5'1 |
H5'2 |
116.5 |
239.9 |
| O5' |
C5' |
H5'1 |
H5'2 |
243.4 |
119.9 |
| H5'1 |
C5' |
O5' |
HO5 |
54.8 |
300.0 |
| H5'2 |
C5' |
C4' |
H4' |
166.2 |
60.7 |
| C4' |
C5' |
H5'2 |
O5' |
126.9 |
240.0 |
| C4' |
C5' |
H5'2 |
H5'1 |
243.5 |
120.1 |
| O5' |
C5' |
H5'2 |
H5'1 |
116.6 |
240.0 |
| H5'2 |
C5' |
O5' |
HO5 |
305.3 |
60.1 |
| HO5 |
O5' |
C5' |
H5'1 |
54.8 |
300.0 |
| HO5 |
O5' |
C5' |
H5'2 |
305.3 |
60.1 |