PDB Chemical Component FM1
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for FM1
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N1 |
C2 |
1.413 |
1.322 |
N1 |
C6 |
1.452 |
1.328 |
C2 |
N3 |
1.366 |
1.313 |
C2 |
H2 |
1.103 |
1.081 |
N3 |
C4 |
1.387 |
1.339 |
C4 |
C5 |
1.414 |
1.406 |
C4 |
C9 |
1.380 |
1.411 |
C5 |
C6 |
1.434 |
1.402 |
C5 |
N7 |
1.391 |
1.368 |
C6 |
N6 |
1.267 |
1.383 |
N6 |
C66 |
1.436 |
1.465 |
N6 |
HN61 |
1.020 |
0.970 |
N7 |
N8 |
1.313 |
1.402 |
N7 |
H7 |
1.020 |
0.970 |
N8 |
C9 |
1.391 |
1.303 |
C9 |
C1' |
1.540 |
1.505 |
C1' |
C2' |
1.546 |
1.545 |
C1' |
O4' |
1.440 |
1.443 |
C1' |
H1' |
1.115 |
1.090 |
C2' |
O2' |
1.408 |
1.429 |
C2' |
C3' |
1.550 |
1.547 |
C2' |
H2' |
1.115 |
1.090 |
O2' |
HO2' |
0.950 |
0.966 |
C3' |
O3' |
1.440 |
1.429 |
C3' |
C4' |
1.493 |
1.543 |
C3' |
H3' |
1.115 |
1.089 |
O3' |
HO3' |
0.950 |
0.967 |
C4' |
O4' |
1.486 |
1.444 |
C4' |
C5' |
1.547 |
1.530 |
C4' |
H4' |
1.116 |
1.090 |
C5' |
O5' |
1.401 |
1.428 |
C5' |
H5'1 |
1.115 |
1.090 |
C5' |
H5'2 |
1.115 |
1.090 |
O5' |
HO5' |
0.950 |
0.967 |
C66 |
H661 |
1.115 |
1.090 |
C66 |
H662 |
1.115 |
1.089 |
C66 |
H663 |
1.115 |
1.089 |
Bond Angles for FM1
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
N1 |
C6 |
125.2 |
121.2 |
N1 |
C2 |
N3 |
121.7 |
122.6 |
N1 |
C2 |
H2 |
120.9 |
118.7 |
N1 |
C6 |
C5 |
112.5 |
118.5 |
N1 |
C6 |
N6 |
121.2 |
120.7 |
N3 |
C2 |
H2 |
117.4 |
118.7 |
C2 |
N3 |
C4 |
113.6 |
120.6 |
N3 |
C4 |
C5 |
128.6 |
118.7 |
N3 |
C4 |
C9 |
125.7 |
134.3 |
C5 |
C4 |
C9 |
105.7 |
107.0 |
C4 |
C5 |
C6 |
118.4 |
118.4 |
C4 |
C5 |
N7 |
110.9 |
106.7 |
C4 |
C9 |
N8 |
104.9 |
108.7 |
C4 |
C9 |
C1' |
137.5 |
125.7 |
C6 |
C5 |
N7 |
130.7 |
134.9 |
C5 |
C6 |
N6 |
126.3 |
120.7 |
C5 |
N7 |
N8 |
103.2 |
108.0 |
C5 |
N7 |
H7 |
130.5 |
126.0 |
C6 |
N6 |
C66 |
117.0 |
120.0 |
C6 |
N6 |
HN61 |
109.5 |
120.0 |
C66 |
N6 |
HN61 |
109.5 |
119.9 |
N6 |
C66 |
H661 |
109.5 |
109.5 |
N6 |
C66 |
H662 |
117.0 |
109.5 |
N6 |
C66 |
H663 |
109.5 |
109.4 |
N8 |
N7 |
H7 |
126.3 |
126.0 |
N7 |
N8 |
C9 |
115.3 |
109.6 |
N8 |
C9 |
C1' |
117.6 |
125.6 |
C9 |
C1' |
C2' |
116.6 |
110.4 |
C9 |
C1' |
O4' |
106.0 |
110.4 |
C9 |
C1' |
H1' |
105.8 |
110.3 |
C2' |
C1' |
O4' |
105.0 |
104.9 |
C2' |
C1' |
H1' |
106.7 |
110.3 |
C1' |
C2' |
O2' |
107.1 |
110.8 |
C1' |
C2' |
C3' |
107.1 |
104.0 |
C1' |
C2' |
H2' |
113.9 |
110.4 |
O4' |
C1' |
H1' |
117.2 |
110.4 |
C1' |
O4' |
C4' |
111.2 |
105.3 |
O2' |
C2' |
C3' |
113.3 |
110.5 |
O2' |
C2' |
H2' |
107.8 |
110.5 |
C2' |
O2' |
HO2' |
107.1 |
106.8 |
C3' |
C2' |
H2' |
107.9 |
110.5 |
C2' |
C3' |
O3' |
114.7 |
110.5 |
C2' |
C3' |
C4' |
104.9 |
104.1 |
C2' |
C3' |
H3' |
110.3 |
110.6 |
O3' |
C3' |
C4' |
112.8 |
110.5 |
O3' |
C3' |
H3' |
102.1 |
110.5 |
C3' |
O3' |
HO3' |
114.7 |
106.8 |
C4' |
C3' |
H3' |
112.3 |
110.5 |
C3' |
C4' |
O4' |
105.8 |
104.8 |
C3' |
C4' |
C5' |
110.1 |
110.5 |
C3' |
C4' |
H4' |
112.5 |
110.4 |
O4' |
C4' |
C5' |
112.4 |
110.4 |
O4' |
C4' |
H4' |
110.3 |
110.4 |
C5' |
C4' |
H4' |
106.0 |
110.2 |
C4' |
C5' |
O5' |
110.2 |
109.5 |
C4' |
C5' |
H5'1 |
111.9 |
109.5 |
C4' |
C5' |
H5'2 |
111.9 |
109.4 |
O5' |
C5' |
H5'1 |
111.9 |
109.5 |
O5' |
C5' |
H5'2 |
111.9 |
109.5 |
C5' |
O5' |
HO5' |
110.2 |
106.8 |
H5'1 |
C5' |
H5'2 |
98.5 |
109.5 |
H661 |
C66 |
H662 |
109.5 |
109.5 |
H661 |
C66 |
H663 |
100.6 |
109.5 |
H662 |
C66 |
H663 |
109.5 |
109.4 |
Torsion Angles for FM1
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
N1 |
C6 |
C5 |
0.3 |
0.2 |
C2 |
N1 |
C6 |
N6 |
179.8 |
180.0 |
N3 |
C2 |
N1 |
H2 |
180.0 |
180.0 |
N1 |
C2 |
N3 |
C4 |
0.1 |
360.0 |
C6 |
N1 |
C2 |
N3 |
359.8 |
0.0 |
C6 |
N1 |
C2 |
H2 |
179.8 |
180.0 |
C4 |
C5 |
C6 |
N1 |
359.7 |
359.5 |
N1 |
C6 |
C5 |
N7 |
179.6 |
180.2 |
C5 |
C6 |
N1 |
N6 |
180.5 |
180.2 |
N1 |
C6 |
N6 |
C66 |
359.9 |
359.9 |
N1 |
C6 |
N6 |
HN61 |
234.7 |
180.0 |
N3 |
C2 |
N1 |
C6 |
359.8 |
0.0 |
N1 |
C2 |
N3 |
H2 |
180.0 |
180.0 |
C2 |
N3 |
C4 |
C5 |
359.8 |
359.7 |
C2 |
N3 |
C4 |
C9 |
180.3 |
180.0 |
H2 |
C2 |
N1 |
C6 |
179.8 |
180.0 |
N1 |
C2 |
H2 |
N3 |
180.0 |
180.0 |
H2 |
C2 |
N3 |
C4 |
180.1 |
180.0 |
C4 |
N3 |
C2 |
H2 |
180.1 |
180.0 |
C5 |
C4 |
N3 |
C9 |
179.5 |
179.7 |
N3 |
C4 |
C5 |
C6 |
0.3 |
0.5 |
N3 |
C4 |
C5 |
N7 |
180.3 |
180.0 |
N3 |
C4 |
C9 |
N8 |
179.5 |
180.1 |
N3 |
C4 |
C9 |
C1' |
359.4 |
359.7 |
N1 |
C6 |
C5 |
C4 |
359.7 |
359.5 |
N3 |
C4 |
C5 |
C9 |
180.4 |
180.2 |
C5 |
C4 |
C9 |
N8 |
359.8 |
0.3 |
C5 |
C4 |
C9 |
C1' |
179.7 |
180.0 |
C6 |
C5 |
C4 |
N7 |
179.9 |
180.5 |
C4 |
C5 |
C6 |
N6 |
180.2 |
179.7 |
C4 |
C5 |
N7 |
N8 |
0.2 |
0.0 |
C4 |
C5 |
N7 |
H7 |
180.2 |
180.0 |
N3 |
C4 |
C9 |
C5 |
179.6 |
179.8 |
C9 |
C4 |
C5 |
C6 |
179.9 |
180.3 |
C9 |
C4 |
C5 |
N7 |
360.0 |
359.8 |
N7 |
N8 |
C9 |
C4 |
0.4 |
359.7 |
N8 |
C9 |
C4 |
C1' |
180.1 |
180.3 |
C4 |
C9 |
C1' |
C2' |
357.0 |
121.9 |
C4 |
C9 |
C1' |
O4' |
113.4 |
237.4 |
C4 |
C9 |
C1' |
H1' |
238.5 |
359.7 |
N1 |
C6 |
C5 |
N6 |
179.5 |
179.8 |
C6 |
C5 |
C4 |
C9 |
179.9 |
180.3 |
C4 |
C5 |
C6 |
N7 |
180.1 |
179.3 |
C6 |
C5 |
N7 |
N8 |
180.3 |
179.4 |
C6 |
C5 |
N7 |
H7 |
0.3 |
359.3 |
C5 |
C6 |
N6 |
C66 |
179.4 |
179.7 |
C5 |
C6 |
N6 |
HN61 |
54.1 |
359.7 |
N7 |
C5 |
C4 |
C9 |
360.0 |
359.8 |
C4 |
C5 |
N7 |
C6 |
179.9 |
180.6 |
N7 |
C5 |
C6 |
N6 |
0.1 |
0.4 |
N8 |
N7 |
C5 |
H7 |
180.0 |
180.1 |
C5 |
N7 |
N8 |
C9 |
359.6 |
0.2 |
N1 |
C6 |
N6 |
C5 |
180.5 |
180.2 |
N6 |
C6 |
C5 |
N7 |
0.1 |
0.4 |
C66 |
N6 |
C6 |
HN61 |
125.3 |
179.9 |
C6 |
N6 |
C66 |
H661 |
54.7 |
180.0 |
C6 |
N6 |
C66 |
H662 |
180.0 |
300.1 |
C6 |
N6 |
C66 |
H663 |
305.3 |
60.0 |
C6 |
N6 |
C66 |
HN61 |
234.7 |
180.1 |
H661 |
C66 |
N6 |
H662 |
234.7 |
239.9 |
H661 |
C66 |
N6 |
H663 |
109.4 |
120.0 |
H662 |
C66 |
N6 |
H663 |
234.7 |
240.1 |
C6 |
N6 |
HN61 |
C66 |
129.5 |
179.9 |
HN61 |
N6 |
C66 |
H661 |
180.0 |
360.0 |
HN61 |
N6 |
C66 |
H662 |
305.3 |
120.0 |
HN61 |
N6 |
C66 |
H663 |
70.5 |
240.0 |
C4 |
C9 |
N8 |
N7 |
0.4 |
359.7 |
C5 |
N7 |
N8 |
H7 |
180.0 |
179.9 |
N7 |
N8 |
C9 |
C1' |
180.4 |
180.0 |
C5 |
N7 |
H7 |
N8 |
180.0 |
180.1 |
H7 |
N7 |
N8 |
C9 |
179.6 |
180.2 |
C4 |
C9 |
N8 |
C1' |
179.9 |
179.7 |
C9 |
N8 |
N7 |
H7 |
179.6 |
180.2 |
N8 |
C9 |
C1' |
C2' |
176.9 |
301.5 |
N8 |
C9 |
C1' |
O4' |
293.3 |
57.0 |
N8 |
C9 |
C1' |
H1' |
58.4 |
179.3 |
C4 |
C9 |
C1' |
N8 |
180.1 |
180.4 |
C2' |
C1' |
C9 |
O4' |
243.5 |
244.5 |
C2' |
C1' |
C9 |
H1' |
118.4 |
122.2 |
C9 |
C1' |
C2' |
O2' |
238.4 |
261.5 |
C9 |
C1' |
C2' |
C3' |
116.6 |
142.7 |
C9 |
C1' |
C2' |
H2' |
357.5 |
24.2 |
O4' |
C1' |
C9 |
H1' |
234.9 |
237.7 |
C9 |
C1' |
O4' |
C4' |
251.5 |
200.6 |
C9 |
C1' |
C2' |
O4' |
117.0 |
118.9 |
C9 |
C1' |
C2' |
H1' |
242.1 |
237.8 |
O4' |
C1' |
C2' |
H1' |
125.1 |
118.9 |
C2' |
C1' |
O4' |
C4' |
15.5 |
319.6 |
O2' |
C2' |
C1' |
C3' |
121.8 |
118.8 |
O2' |
C2' |
C1' |
H2' |
240.9 |
237.3 |
C1' |
C2' |
O2' |
HO2' |
180.0 |
183.8 |
C3' |
C2' |
C1' |
H2' |
119.1 |
118.5 |
C1' |
C2' |
C3' |
O3' |
110.0 |
118.8 |
C1' |
C2' |
C3' |
C4' |
345.7 |
0.2 |
C1' |
C2' |
C3' |
H3' |
224.5 |
241.5 |
C9 |
C1' |
O4' |
C2' |
236.0 |
241.1 |
C9 |
C1' |
O4' |
H1' |
117.7 |
122.2 |
C2' |
C1' |
O4' |
H1' |
241.7 |
241.2 |
O4' |
C1' |
C2' |
O2' |
121.4 |
142.6 |
O4' |
C1' |
C2' |
C3' |
359.6 |
23.8 |
O4' |
C1' |
C2' |
H2' |
240.5 |
265.3 |
C3' |
C4' |
O4' |
C1' |
334.9 |
40.5 |
C1' |
O4' |
C4' |
C5' |
95.0 |
159.5 |
C1' |
O4' |
C4' |
H4' |
213.0 |
281.6 |
C9 |
C1' |
H1' |
C2' |
124.8 |
122.2 |
C9 |
C1' |
H1' |
O4' |
242.1 |
237.7 |
C2' |
C1' |
H1' |
O4' |
117.3 |
115.5 |
H1' |
C1' |
C2' |
O2' |
356.3 |
23.7 |
H1' |
C1' |
C2' |
C3' |
234.5 |
264.9 |
H1' |
C1' |
C2' |
H2' |
115.4 |
146.4 |
H1' |
C1' |
O4' |
C4' |
133.8 |
78.4 |
O2' |
C2' |
C1' |
O4' |
121.4 |
142.6 |
O2' |
C2' |
C1' |
H1' |
356.3 |
23.7 |
C1' |
C2' |
O2' |
C3' |
242.2 |
245.3 |
C1' |
C2' |
O2' |
H2' |
123.0 |
122.6 |
C3' |
C2' |
O2' |
H2' |
240.8 |
237.4 |
O2' |
C2' |
C3' |
O3' |
352.1 |
359.9 |
O2' |
C2' |
C3' |
C4' |
227.9 |
241.2 |
O2' |
C2' |
C3' |
H3' |
106.7 |
122.5 |
C3' |
C2' |
C1' |
O4' |
359.6 |
23.8 |
C3' |
C2' |
C1' |
H1' |
234.5 |
264.9 |
C1' |
C2' |
C3' |
O2' |
117.9 |
119.0 |
C1' |
C2' |
C3' |
H2' |
237.0 |
241.6 |
O2' |
C2' |
C3' |
H2' |
119.2 |
122.6 |
C3' |
C2' |
O2' |
HO2' |
297.8 |
298.6 |
O3' |
C3' |
C2' |
C4' |
124.2 |
118.6 |
O3' |
C3' |
C2' |
H3' |
245.5 |
237.3 |
C2' |
C3' |
O3' |
HO3' |
180.0 |
183.9 |
C4' |
C3' |
C2' |
H3' |
121.2 |
118.7 |
C2' |
C3' |
C4' |
O4' |
23.1 |
335.9 |
C2' |
C3' |
C4' |
C5' |
261.5 |
217.0 |
C2' |
C3' |
C4' |
H4' |
143.5 |
94.8 |
H2' |
C2' |
C1' |
O4' |
240.5 |
265.3 |
H2' |
C2' |
C1' |
H1' |
115.4 |
146.4 |
C1' |
C2' |
H2' |
O2' |
241.3 |
237.1 |
C1' |
C2' |
H2' |
C3' |
118.7 |
114.4 |
O2' |
C2' |
H2' |
C3' |
237.4 |
237.3 |
H2' |
C2' |
O2' |
HO2' |
57.0 |
61.2 |
H2' |
C2' |
C3' |
O3' |
233.0 |
237.2 |
H2' |
C2' |
C3' |
C4' |
108.7 |
118.6 |
H2' |
C2' |
C3' |
H3' |
347.5 |
359.9 |
HO2' |
O2' |
C2' |
C3' |
297.8 |
298.6 |
HO2' |
O2' |
C2' |
H2' |
57.0 |
61.2 |
O3' |
C3' |
C2' |
H2' |
233.0 |
237.2 |
C2' |
C3' |
O3' |
C4' |
240.0 |
245.4 |
C2' |
C3' |
O3' |
H3' |
119.3 |
122.7 |
C4' |
C3' |
O3' |
H3' |
239.3 |
237.3 |
O3' |
C3' |
C4' |
O4' |
257.7 |
217.3 |
O3' |
C3' |
C4' |
C5' |
136.1 |
98.4 |
O3' |
C3' |
C4' |
H4' |
18.1 |
336.2 |
C1' |
O4' |
C4' |
C3' |
334.9 |
40.5 |
C4' |
C3' |
C2' |
H2' |
108.7 |
118.6 |
C2' |
C3' |
C4' |
O3' |
125.4 |
118.6 |
C2' |
C3' |
C4' |
H3' |
240.1 |
241.3 |
O3' |
C3' |
C4' |
H3' |
114.7 |
122.7 |
C4' |
C3' |
O3' |
HO3' |
299.9 |
298.5 |
O4' |
C4' |
C3' |
C5' |
121.6 |
118.9 |
O4' |
C4' |
C3' |
H4' |
239.6 |
241.1 |
C5' |
C4' |
C3' |
H4' |
118.0 |
122.2 |
C3' |
C4' |
C5' |
O5' |
182.8 |
176.9 |
C3' |
C4' |
C5' |
H5'1 |
57.5 |
297.0 |
C3' |
C4' |
C5' |
H5'2 |
308.0 |
56.9 |
H3' |
C3' |
C2' |
H2' |
347.5 |
359.9 |
C2' |
C3' |
H3' |
O3' |
237.7 |
237.4 |
C2' |
C3' |
H3' |
C4' |
116.7 |
114.7 |
O3' |
C3' |
H3' |
C4' |
239.0 |
237.3 |
H3' |
C3' |
O3' |
HO3' |
60.7 |
61.2 |
H3' |
C3' |
C4' |
O4' |
143.0 |
94.6 |
H3' |
C3' |
C4' |
C5' |
21.4 |
335.7 |
H3' |
C3' |
C4' |
H4' |
263.4 |
213.5 |
HO3' |
O3' |
C3' |
C4' |
299.9 |
298.5 |
HO3' |
O3' |
C3' |
H3' |
60.7 |
61.2 |
C4' |
O4' |
C1' |
H1' |
133.8 |
78.4 |
O4' |
C4' |
C3' |
H3' |
143.0 |
94.6 |
C3' |
C4' |
O4' |
C5' |
239.9 |
241.0 |
C3' |
C4' |
O4' |
H4' |
121.9 |
118.9 |
C5' |
C4' |
O4' |
H4' |
242.0 |
237.9 |
O4' |
C4' |
C5' |
O5' |
65.2 |
61.4 |
O4' |
C4' |
C5' |
H5'1 |
299.9 |
181.5 |
O4' |
C4' |
C5' |
H5'2 |
190.4 |
301.4 |
C5' |
C4' |
C3' |
H3' |
21.4 |
335.7 |
C3' |
C4' |
C5' |
O4' |
117.6 |
115.5 |
C3' |
C4' |
C5' |
H4' |
238.1 |
237.7 |
O4' |
C4' |
C5' |
H4' |
120.5 |
122.2 |
O5' |
C5' |
C4' |
H5'1 |
125.3 |
239.9 |
O5' |
C5' |
C4' |
H5'2 |
234.7 |
120.0 |
C4' |
C5' |
O5' |
HO5' |
180.0 |
180.1 |
H5'1 |
C5' |
C4' |
H5'2 |
109.5 |
240.0 |
H4' |
C4' |
C3' |
H3' |
263.4 |
213.5 |
C3' |
C4' |
H4' |
O4' |
242.2 |
244.5 |
C3' |
C4' |
H4' |
C5' |
120.4 |
122.3 |
O4' |
C4' |
H4' |
C5' |
238.2 |
237.8 |
H4' |
C4' |
C5' |
O5' |
304.7 |
299.2 |
H4' |
C4' |
C5' |
H5'1 |
179.4 |
59.3 |
H4' |
C4' |
C5' |
H5'2 |
70.0 |
179.2 |
O5' |
C5' |
C4' |
H4' |
304.7 |
299.2 |
C4' |
C5' |
O5' |
H5'1 |
234.7 |
120.0 |
C4' |
C5' |
O5' |
H5'2 |
125.3 |
240.0 |
H5'1 |
C5' |
O5' |
H5'2 |
250.5 |
120.0 |
H5'1 |
C5' |
C4' |
H4' |
179.4 |
59.3 |
C4' |
C5' |
H5'1 |
O5' |
124.3 |
240.0 |
C4' |
C5' |
H5'1 |
H5'2 |
242.2 |
120.0 |
O5' |
C5' |
H5'1 |
H5'2 |
117.8 |
240.0 |
H5'1 |
C5' |
O5' |
HO5' |
305.3 |
60.0 |
H5'2 |
C5' |
C4' |
H4' |
70.0 |
179.2 |
C4' |
C5' |
H5'2 |
O5' |
235.7 |
120.0 |
C4' |
C5' |
H5'2 |
H5'1 |
117.8 |
240.0 |
O5' |
C5' |
H5'2 |
H5'1 |
242.2 |
120.0 |
H5'2 |
C5' |
O5' |
HO5' |
54.7 |
300.0 |
HO5' |
O5' |
C5' |
H5'1 |
305.3 |
60.0 |
HO5' |
O5' |
C5' |
H5'2 |
54.7 |
300.0 |
H661 |
C66 |
N6 |
HN61 |
180.0 |
360.0 |
N6 |
C66 |
H661 |
H662 |
129.5 |
120.1 |
N6 |
C66 |
H661 |
H663 |
244.8 |
240.0 |
H662 |
C66 |
H661 |
H663 |
115.2 |
119.9 |
H662 |
C66 |
N6 |
HN61 |
305.3 |
120.0 |
N6 |
C66 |
H662 |
H661 |
234.7 |
239.9 |
N6 |
C66 |
H662 |
H663 |
125.3 |
119.9 |
H661 |
C66 |
H662 |
H663 |
250.6 |
240.0 |
H663 |
C66 |
N6 |
HN61 |
70.5 |
240.0 |
N6 |
C66 |
H663 |
H661 |
115.2 |
120.0 |
N6 |
C66 |
H663 |
H662 |
230.5 |
240.0 |
H661 |
C66 |
H663 |
H662 |
115.2 |
120.0 |