Atom Nomenclature for FLV

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for FLV

Atom Name (V3) Atom Name (V2)
OAB OAB
CAM CAM
CAN CAN
CAH CAH
CAI CAI
OAC OAC
CAF CAF
CAK CAK
OAE OAE
CAO CAO
CAL CAL
OAA OAA
CAG CAG
CAJ CAJ
OAD OAD
HAH HAH
HAC HAC
HAF HAF
HAE HAE
HAG HAG
HAD HAD