Atom Nomenclature for FLJ

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for FLJ

Atom Name (V3) Atom Name (V2)
N3 N1
C4 C1
C5 C2
C7 C3
C8 C4
C10 C5
N12 N2
C17 C6
C20 C7
C21 C8
C22 C9
C24 C10
C28 C11
C1 C12
C2 C13
N6 N3
N9 N4
C11 C14
N13 N5
C14 C15
N15 N6
C16 C16
C18 C17
C19 C18
N23 N7
C25 C19
O26 O1
C27 C20
O29 O2
F30 F1
C31 C21
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20