Atom Nomenclature for FII

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for FII

Atom Name (V3) Atom Name (V2)
C1 C1
C2 C2
C6 C6
C10 C10
C11 C11
C12 C12
C15 C15
C18 C18
C22 C22
C23 C23
C24 C24
C27 C27
C30 C30
C34 C34
C35 C35
O36 O36
N42 N42
C43 C43
O44 O44
C45 C45
P46 P46
O49 O49
O50 O50
O51 O51
H11 1H1
H12 2H1
H13 3H1
H61 1H6
H62 2H6
H63 3H6
H101 1H10
H111 1H11
H112 2H11
H121 1H12
H122 2H12
H181 1H18
H182 2H18
H183 3H18
H221 1H22
H231 1H23
H232 2H23
H241 1H24
H242 2H24
H301 1H30
H302 2H30
H303 3H30
H341 1H34
H351 1H35
H352 2H35
HN1 1HN
H451 1H45
H452 2H45
H501 1H50
H511 1H51