Atom Nomenclature for FHY

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for FHY

Atom Name (V3) Atom Name (V2)
CBI C1
CBG C2
OBH O1
NBF N1
CBE C3
CBB C4
OBC O2
CBD C5
OBA O3
CAZ C6
CAY C7
OAX O4
CAS C8
CAT C9
CAU C10
OAV O5
OAW O6
OAR O7
CAQ C11
CAP C12
O1 O8
C1 C13
O5 O9
C5 C14
C6 C15
O6 O10
C4 C16
O4 O11
C3 C17
O3 O12
C2 C18
N2 N2
C7 C19
O7 O13
C8 C20
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29
H30 H30
H31 H31
H32 H32