Atom Nomenclature for FHF

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for FHF

Atom Name (V3) Atom Name (V2)
C C
N N
O O
CA CA
CB CB
CAA CAA
OAD OAD
OAE OAE
OAG OAG
FAH FAH
CAI CAI
CAJ CAJ
CAK CAK
CAL CAL
CAM CAM
CAN CAN
CAO CAO
CAP CAP
CAQ CAQ
NAR NAR
CAT CAT
CAV CAV
CAW CAW
CAY CAY
NBA NBA
CG1 CG1
CG2 CG2
HN HN
HA HA
HB HB
HAA HAA
HAAA HAAA
HAAB HAAB
HOAG HOAG
HAI HAI
HAJ HAJ
HAK HAK
HAL HAL
HAM HAM
HAN HAN
HANA HANA
HAO HAO
HAOA HAOA
HAP HAP
HAPA HAPA
HAQ HAQ
HAQA HAQA
HNAR HNAR
HAY HAY
HG1 HG1
HG1A HG1A
HG1B HG1B
HG2 HG2
HG2A HG2A
HG2B HG2B