Atom Nomenclature for FG3

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for FG3

Atom Name (V3) Atom Name (V2)
C C
N N
O O
CA CA
CAA CAA
CAB CAB
OAD OAD
OAE OAE
OAF OAF
CAH CAH
CAI CAI
CAJ CAJ
CAK CAK
CAL CAL
CAM CAM
CAN CAN
NAP NAP
NAQ NAQ
OAR OAR
CAT CAT
CAU CAU
CAV CAV
CAW CAW
CAX CAX
CAY CAY
CAZ CAZ
SBB SBB
OXT OXT
HO HO
HA HA
HAA HAA
HAAA HAAA
HAAB HAAB
HAAC HAAC
HAB HAB
HABA HABA
HABB HABB
HAH HAH
HAI HAI
HAJ HAJ
HAK HAK
HAL HAL
HAM HAM
HAN HAN
HNAQ HNAQ