Atom Nomenclature for FG1

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for FG1

Atom Name (V3) Atom Name (V2)
O30 O30
C27 C27
O28 O28
C26 C26
O29 O29
N25 N25
C22 C22
C23 C23
C24 C24
C19 C19
C20 C20
C21 C21
C18 C18
C17 C17
N16 N16
C12 C12
O13 O13
C11 C11
N10 N10
C8 C8
O9 O9
C7 C7
C6 C6
N5 N5
C3 C3
O4 O4
C2 C2
BR1 BR1
C14 C14
O15 O15
H30 H30
H25 H25
H23 H23
H24 H24
H20 H20
H21 H21
H181 1H18
H182 2H18
H171 1H17
H172 2H17
H16 H16
H11 H11
H10 H10
H71 1H7
H72 2H7
H61 1H6
H62 2H6
HN5 HN5
H21A 1H2
H22 2H2
H141 1H14
H142 2H14
H15 H15