PDB Chemical Component FFJ
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for FFJ
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O2 |
C2 |
1.183 |
1.220 |
| C2 |
N3 |
1.319 |
1.331 |
| C2 |
N1 |
1.328 |
1.346 |
| N3 |
C4 |
1.353 |
1.327 |
| C2' |
C1' |
1.569 |
1.545 |
| C2' |
C3' |
1.314 |
1.546 |
| C1' |
N1 |
1.348 |
1.465 |
| C1' |
O4' |
1.550 |
1.444 |
| N1 |
C6 |
1.336 |
1.363 |
| O3' |
C3' |
1.467 |
1.429 |
| C3' |
C4' |
1.633 |
1.544 |
| C4 |
N4 |
1.455 |
1.376 |
| C4 |
C5 |
1.377 |
1.410 |
| O4' |
C4' |
1.296 |
1.444 |
| C4' |
C5' |
1.527 |
1.530 |
| C6 |
C5 |
1.389 |
1.355 |
| O2B |
PB |
1.549 |
1.480 |
| C5' |
O5' |
1.401 |
1.429 |
| O5' |
PA |
1.669 |
1.609 |
| PB |
O3A |
1.637 |
1.610 |
| PB |
O1B |
1.527 |
1.610 |
| PB |
C3B |
1.854 |
1.823 |
| O3A |
PA |
1.611 |
1.610 |
| F4B |
C3B |
1.357 |
1.398 |
| C3B |
F3B |
1.398 |
1.400 |
| C3B |
PG |
1.855 |
1.823 |
| PA |
O2A |
1.504 |
1.480 |
| PA |
O1A |
1.490 |
1.610 |
| PG |
O3G |
1.491 |
1.480 |
| PG |
O2G |
1.513 |
1.610 |
| PG |
O1G |
1.484 |
1.610 |
| N4 |
H1 |
1.000 |
0.970 |
| N4 |
H2 |
1.000 |
0.969 |
| C5 |
H3 |
1.081 |
1.079 |
| C6 |
H4 |
1.080 |
1.080 |
| C1' |
H5 |
1.100 |
1.089 |
| C2' |
H6 |
1.100 |
1.089 |
| C2' |
H7 |
1.100 |
1.090 |
| C3' |
H8 |
1.099 |
1.090 |
| O3' |
H9 |
0.950 |
0.967 |
| C4' |
H10 |
1.100 |
1.090 |
| C5' |
H11 |
1.100 |
1.090 |
| C5' |
H12 |
1.100 |
1.090 |
| O1A |
H13 |
0.950 |
0.967 |
| O1B |
H14 |
0.950 |
0.967 |
| O2G |
H15 |
0.950 |
0.967 |
| O1G |
H16 |
0.950 |
0.967 |
Bond Angles for FFJ
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O2 |
C2 |
N1 |
119.0 |
119.5 |
| C2' |
C1' |
O4' |
102.7 |
104.8 |
| C2' |
C1' |
H5 |
108.3 |
110.5 |
| C2' |
C3' |
C4' |
102.4 |
104.1 |
| C3' |
C2' |
H6 |
110.9 |
110.5 |
| C3' |
C2' |
H7 |
111.0 |
110.5 |
| C2' |
C3' |
H8 |
111.7 |
110.5 |
| C1' |
O4' |
C4' |
107.7 |
105.2 |
| O4' |
C1' |
H5 |
108.5 |
110.4 |
| N1 |
C6 |
H4 |
119.2 |
120.4 |
| O3' |
C3' |
C4' |
110.9 |
110.5 |
| O3' |
C3' |
H8 |
109.3 |
110.5 |
| C3' |
C4' |
O4' |
104.8 |
104.8 |
| C3' |
C4' |
C5' |
110.9 |
110.4 |
| C4' |
C3' |
H8 |
107.3 |
110.5 |
| C3' |
C4' |
H10 |
107.9 |
110.4 |
| N4 |
C4 |
C5 |
118.8 |
120.2 |
| C4 |
N4 |
H1 |
120.0 |
119.9 |
| C4 |
N4 |
H2 |
120.0 |
120.0 |
| C4 |
C5 |
H3 |
121.7 |
120.6 |
| O4' |
C4' |
C5' |
111.2 |
110.4 |
| O4' |
C4' |
H10 |
112.8 |
110.4 |
| C4' |
C5' |
O5' |
109.2 |
109.5 |
| C5' |
C4' |
H10 |
109.2 |
110.4 |
| C4' |
C5' |
H11 |
109.5 |
109.5 |
| C4' |
C5' |
H12 |
109.6 |
109.4 |
| C6 |
C5 |
H3 |
121.7 |
120.5 |
| O2B |
PB |
C3B |
108.8 |
109.5 |
| C5' |
O5' |
PA |
117.8 |
123.0 |
| O5' |
C5' |
H11 |
109.5 |
109.5 |
| O5' |
C5' |
H12 |
109.5 |
109.5 |
| O5' |
PA |
O2A |
110.0 |
109.5 |
| O5' |
PA |
O1A |
110.3 |
109.5 |
| O1B |
PB |
C3B |
111.9 |
109.4 |
| PB |
O1B |
H14 |
109.5 |
114.0 |
| PB |
C3B |
F3B |
107.1 |
109.4 |
| PB |
C3B |
PG |
110.3 |
109.5 |
| F4B |
C3B |
PG |
110.7 |
109.5 |
| F3B |
C3B |
PG |
107.8 |
109.4 |
| C3B |
PG |
O3G |
110.6 |
109.5 |
| C3B |
PG |
O2G |
109.5 |
109.5 |
| C3B |
PG |
O1G |
106.8 |
109.4 |
| O1A |
PA |
O2A |
113.4 |
109.4 |
| PA |
O1A |
H13 |
109.5 |
114.0 |
| O2G |
PG |
O3G |
111.4 |
109.5 |
| O1G |
PG |
O3G |
108.7 |
109.5 |
| O2G |
PG |
O1G |
109.7 |
109.5 |
| PG |
O2G |
H15 |
109.5 |
114.0 |
| PG |
O1G |
H16 |
109.5 |
114.0 |
| H1 |
N4 |
H2 |
120.0 |
120.0 |
| H6 |
C2' |
H7 |
109.5 |
110.6 |
| H11 |
C5' |
H12 |
109.5 |
109.5 |
Torsion Angles for FFJ
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C6 |
H4 |
179.5 |
179.7 |
| N3 |
C4 |
N4 |
H1 |
0.0 |
179.7 |
| N3 |
C4 |
N4 |
H2 |
180.0 |
359.7 |
| N3 |
C4 |
C5 |
H3 |
180.5 |
180.3 |
| C2' |
C1' |
O4' |
C4' |
0.1 |
319.5 |
| O4' |
C1' |
C2' |
H5 |
114.6 |
118.9 |
| C3' |
C2' |
C1' |
O4' |
331.3 |
24.0 |
| C3' |
C2' |
C1' |
H5 |
216.7 |
265.1 |
| O3' |
C3' |
C2' |
C4' |
120.3 |
118.6 |
| O3' |
C3' |
C2' |
H8 |
234.8 |
237.3 |
| C2' |
C3' |
C4' |
O4' |
316.7 |
336.0 |
| C2' |
C3' |
C4' |
C5' |
196.6 |
217.2 |
| C4' |
C3' |
C2' |
H8 |
114.5 |
118.7 |
| C2' |
C3' |
C4' |
H10 |
77.1 |
94.8 |
| H6 |
C2' |
C3' |
H7 |
121.9 |
122.7 |
| C1' |
N1 |
C6 |
H4 |
359.0 |
0.1 |
| C2' |
C1' |
O4' |
H5 |
245.6 |
241.0 |
| C3' |
C4' |
O4' |
C1' |
22.8 |
40.6 |
| C1' |
O4' |
C4' |
C5' |
142.6 |
159.4 |
| C1' |
O4' |
C4' |
H10 |
265.6 |
281.7 |
| N1 |
C6 |
C5 |
H3 |
179.7 |
180.1 |
| C2' |
C3' |
O3' |
C4' |
244.5 |
245.4 |
| O3' |
C3' |
C2' |
H6 |
41.9 |
360.0 |
| O3' |
C3' |
C2' |
H7 |
280.0 |
237.3 |
| C2' |
C3' |
O3' |
H8 |
126.4 |
122.7 |
| O3' |
C3' |
C4' |
O4' |
193.7 |
217.3 |
| O3' |
C3' |
C4' |
C5' |
73.6 |
98.5 |
| C4' |
C3' |
O3' |
H8 |
241.9 |
237.3 |
| O3' |
C3' |
C4' |
H10 |
314.1 |
336.2 |
| C4' |
C3' |
C2' |
H6 |
281.6 |
241.4 |
| C4' |
C3' |
C2' |
H7 |
159.7 |
118.7 |
| C2' |
C3' |
C4' |
H8 |
242.3 |
241.3 |
| C1' |
O4' |
C4' |
C3' |
22.8 |
40.6 |
| O3' |
C3' |
C4' |
H8 |
119.3 |
122.7 |
| O4' |
C4' |
C3' |
C5' |
120.1 |
118.8 |
| O4' |
C4' |
C3' |
H10 |
239.6 |
241.1 |
| C3' |
C4' |
C5' |
O5' |
63.4 |
184.9 |
| C5' |
C4' |
C3' |
H10 |
119.5 |
122.3 |
| C3' |
C4' |
C5' |
H11 |
183.4 |
305.0 |
| C3' |
C4' |
C5' |
H12 |
303.5 |
65.0 |
| N4 |
C4 |
C5 |
H3 |
0.2 |
360.0 |
| H1 |
N4 |
C4 |
H2 |
180.0 |
180.1 |
| C5 |
C4 |
N4 |
H1 |
180.3 |
0.1 |
| C5 |
C4 |
N4 |
H2 |
0.3 |
180.0 |
| C6 |
C5 |
C4 |
H3 |
180.0 |
180.0 |
| C4' |
O4' |
C1' |
H5 |
114.5 |
78.4 |
| C3' |
C4' |
O4' |
C5' |
240.1 |
241.2 |
| O4' |
C4' |
C3' |
H8 |
74.4 |
94.7 |
| C3' |
C4' |
O4' |
H10 |
117.1 |
118.9 |
| O4' |
C4' |
C5' |
O5' |
307.2 |
69.6 |
| C5' |
C4' |
O4' |
H10 |
237.0 |
237.7 |
| O4' |
C4' |
C5' |
H11 |
67.2 |
189.7 |
| O4' |
C4' |
C5' |
H12 |
187.3 |
309.6 |
| C3' |
C4' |
C5' |
O4' |
116.2 |
115.4 |
| C5' |
C4' |
C3' |
H8 |
314.3 |
335.9 |
| C3' |
C4' |
C5' |
H10 |
241.2 |
237.7 |
| O4' |
C4' |
C5' |
H10 |
125.1 |
122.3 |
| C4' |
C5' |
O5' |
PA |
221.8 |
180.0 |
| O5' |
C5' |
C4' |
H11 |
240.0 |
239.9 |
| O5' |
C5' |
C4' |
H12 |
119.9 |
120.0 |
| H11 |
C5' |
C4' |
H12 |
239.9 |
240.0 |
| C4 |
C5 |
C6 |
H3 |
180.0 |
180.0 |
| O1B |
PB |
O2B |
C3B |
235.7 |
240.1 |
| O2B |
PB |
O1B |
H14 |
360.0 |
180.0 |
| O2B |
PB |
C3B |
F3B |
92.8 |
60.0 |
| O2B |
PB |
C3B |
PG |
209.8 |
300.0 |
| O5' |
C5' |
C4' |
H10 |
182.2 |
307.3 |
| C4' |
C5' |
O5' |
H11 |
119.9 |
120.0 |
| C4' |
C5' |
O5' |
H12 |
240.0 |
240.1 |
| C5' |
O5' |
PA |
O2A |
181.9 |
305.1 |
| C5' |
O5' |
PA |
O1A |
307.7 |
65.0 |
| H11 |
C5' |
O5' |
H12 |
120.1 |
120.0 |
| PA |
O5' |
C5' |
H11 |
101.9 |
60.0 |
| PA |
O5' |
C5' |
H12 |
341.8 |
299.9 |
| O1A |
PA |
O5' |
O2A |
125.8 |
120.0 |
| O5' |
PA |
O1A |
H13 |
236.1 |
60.0 |
| O2B |
PB |
O1B |
C3B |
122.6 |
120.0 |
| O1B |
PB |
C3B |
F3B |
217.2 |
180.0 |
| O1B |
PB |
C3B |
PG |
334.2 |
60.0 |
| C3B |
PB |
O1B |
H14 |
237.4 |
60.0 |
| F4B |
C3B |
PB |
PG |
122.2 |
240.0 |
| F3B |
C3B |
PB |
PG |
243.0 |
119.9 |
| PB |
C3B |
PG |
O3G |
90.3 |
59.9 |
| PB |
C3B |
PG |
O2G |
327.2 |
180.0 |
| PB |
C3B |
PG |
O1G |
208.5 |
300.0 |
| O3A |
PA |
O1A |
H13 |
117.7 |
300.0 |
| PB |
C3B |
F4B |
PG |
238.1 |
120.0 |
| F3B |
C3B |
F4B |
PG |
119.8 |
240.0 |
| F4B |
C3B |
PG |
O3G |
328.8 |
180.0 |
| F4B |
C3B |
PG |
O2G |
205.7 |
300.0 |
| F4B |
C3B |
PG |
O1G |
86.9 |
60.0 |
| PB |
C3B |
F3B |
PG |
118.7 |
240.0 |
| F4B |
C3B |
F3B |
PG |
238.5 |
120.0 |
| F3B |
C3B |
PG |
O3G |
206.9 |
300.0 |
| F3B |
C3B |
PG |
O2G |
83.8 |
60.1 |
| F3B |
C3B |
PG |
O1G |
325.0 |
180.0 |
| PB |
C3B |
PG |
F3B |
243.4 |
119.9 |
| O2G |
PG |
C3B |
O3G |
236.9 |
120.1 |
| O1G |
PG |
C3B |
O3G |
118.1 |
240.0 |
| O2G |
PG |
C3B |
O1G |
118.8 |
240.1 |
| C3B |
PG |
O2G |
H15 |
122.6 |
180.0 |
| C3B |
PG |
O1G |
H16 |
240.6 |
300.0 |
| O5' |
PA |
O2A |
O1A |
124.1 |
120.0 |
| O2A |
PA |
O1A |
H13 |
360.0 |
180.0 |
| O5' |
PA |
O1A |
O2A |
236.1 |
240.0 |
| C3B |
PG |
O3G |
O2G |
238.0 |
120.0 |
| C3B |
PG |
O3G |
O1G |
117.0 |
240.0 |
| O2G |
PG |
O3G |
O1G |
239.0 |
120.0 |
| O3G |
PG |
O2G |
H15 |
360.0 |
300.1 |
| O3G |
PG |
O1G |
H16 |
360.0 |
180.0 |
| C3B |
PG |
O2G |
O3G |
122.6 |
239.9 |
| C3B |
PG |
O2G |
O1G |
243.0 |
119.9 |
| O1G |
PG |
O2G |
O3G |
239.6 |
120.0 |
| O2G |
PG |
O1G |
H16 |
122.0 |
60.0 |
| C3B |
PG |
O1G |
O3G |
240.7 |
120.0 |
| C3B |
PG |
O1G |
O2G |
118.6 |
240.1 |
| O2G |
PG |
O1G |
O3G |
122.0 |
240.0 |
| O1G |
PG |
O2G |
H15 |
239.6 |
60.1 |
| H1 |
N4 |
C4 |
C5 |
180.3 |
0.1 |
| C4 |
N4 |
H1 |
H2 |
180.0 |
179.9 |
| H2 |
N4 |
C4 |
C5 |
0.3 |
180.0 |
| C4 |
N4 |
H2 |
H1 |
180.0 |
180.1 |
| H4 |
C6 |
C5 |
H3 |
359.7 |
360.0 |
| C2' |
C1' |
H5 |
O4' |
110.7 |
115.5 |
| H5 |
C1' |
O4' |
C4' |
114.5 |
78.4 |
| H6 |
C2' |
C1' |
O4' |
90.3 |
142.6 |
| H6 |
C2' |
C1' |
H5 |
335.8 |
23.7 |
| H6 |
C2' |
C3' |
C4' |
281.6 |
241.4 |
| C3' |
C2' |
H6 |
H7 |
237.2 |
237.4 |
| H6 |
C2' |
C3' |
H8 |
167.1 |
122.7 |
| H7 |
C2' |
C1' |
O4' |
212.2 |
265.4 |
| H7 |
C2' |
C1' |
H5 |
97.7 |
146.5 |
| H7 |
C2' |
C3' |
C4' |
159.7 |
118.7 |
| C3' |
C2' |
H7 |
H6 |
122.8 |
122.7 |
| H7 |
C2' |
C3' |
H8 |
45.2 |
360.0 |
| C2' |
C3' |
H8 |
C4' |
111.5 |
114.7 |
| H8 |
C3' |
C2' |
H6 |
167.1 |
122.7 |
| H8 |
C3' |
C2' |
H7 |
45.2 |
360.0 |
| O3' |
C3' |
H8 |
C4' |
239.7 |
237.4 |
| H8 |
C3' |
C4' |
O4' |
74.4 |
94.7 |
| H8 |
C3' |
C4' |
C5' |
314.3 |
335.9 |
| H8 |
C3' |
C4' |
H10 |
194.8 |
213.5 |
| H9 |
O3' |
C3' |
C4' |
258.5 |
176.0 |
| H9 |
O3' |
C3' |
H8 |
16.6 |
298.7 |
| C3' |
C4' |
H10 |
O4' |
244.7 |
244.6 |
| C3' |
C4' |
H10 |
C5' |
120.6 |
122.3 |
| H10 |
C4' |
C3' |
H8 |
194.8 |
213.5 |
| O4' |
C4' |
H10 |
C5' |
235.9 |
237.7 |
| H10 |
C4' |
C5' |
O5' |
182.2 |
307.3 |
| H10 |
C4' |
C5' |
H11 |
302.1 |
67.4 |
| H10 |
C4' |
C5' |
H12 |
62.2 |
187.3 |
| C4' |
C5' |
H11 |
O5' |
240.3 |
240.0 |
| H11 |
C5' |
C4' |
H10 |
302.1 |
67.4 |
| C4' |
C5' |
H11 |
H12 |
120.1 |
119.9 |
| H11 |
C5' |
O5' |
PA |
101.9 |
60.0 |
| O5' |
C5' |
H11 |
H12 |
239.9 |
240.0 |
| C4' |
C5' |
H12 |
O5' |
119.8 |
120.0 |
| H12 |
C5' |
C4' |
H10 |
62.2 |
187.3 |
| C4' |
C5' |
H12 |
H11 |
239.9 |
240.0 |
| H12 |
C5' |
O5' |
PA |
341.8 |
299.9 |
| O5' |
C5' |
H12 |
H11 |
120.1 |
120.1 |
| H13 |
O1A |
PA |
O2A |
360.0 |
180.0 |
| H14 |
O1B |
PB |
C3B |
237.4 |
60.0 |
| H15 |
O2G |
PG |
O3G |
360.0 |
300.1 |
| H15 |
O2G |
PG |
O1G |
239.6 |
60.1 |
| H16 |
O1G |
PG |
O3G |
360.0 |
180.0 |