Atom Nomenclature for FEW

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for FEW

Atom Name (V3) Atom Name (V2)
C13 C1
C17 C2
C20 C3
C21 C4
C22 C5
C24 C6
C28 C7
C01 C8
C02 C9
C03 C10
C04 C11
C05 C12
C06 C13
C07 C14
C08 C15
C11 C16
C12 C17
C14 C18
C16 C19
C19 C20
C23 C21
C29 C22
C30 C23
C31 C24
C32 C25
C33 C26
C34 C27
C36 C28
C37 C29
C39 C30
C40 C31
F25 F1
F26 F2
F27 F3
N10 N1
N15 N2
N18 N3
N35 N4
N38 N5
N41 N6
O09 O1
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29
H30 H30
H31 H31