Atom Nomenclature for FDZ

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for FDZ

Atom Name (V3) Atom Name (V2)
C01 C1
C02 C2
C03 C3
C04 C4
C05 C5
C06 C6
O07 O1
C08 C7
F09 F1
F10 F2
F11 F3
N12 N1
C13 C8
O14 O2
N15 N2
C16 C9
C17 C10
N18 N3
N19 N4
S20 S1
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H10 H10