PDB Chemical Component FDG

Ideal Model

Chemical Description

Name 2-amino-9-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranosyl)-7,9-dihydro-1H-purine-6,8-dione
Formula C10 H13 F N5 O8 P
Formal charge 0
Molecular weight 381.211 g/mol
Component type DNA LINKING
Nonstandard Parent Id DG

Chemical features

Atom count 38
Chiral atom count 4
Chiral atoms C1' C2' C3' C4'
Observed leaving atoms OP3 HO3'
Bond count 40
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 2-amino-9-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranosyl)-7,9-dihydro-1H-purine-6,8-dione
Systematic name (OpenEye OEToolkits) [(2R,3R,4S,5R)-5-(2-azanyl-6,8-dioxo-1,7-dihydropurin-9-yl)-4-fluoro-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) NC1=NC2=C(NC(=O)N2[C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@@H]3F)C(=O)N1
SMILES (CACTVS) NC1=NC2=C(NC(=O)N2[CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3F)C(=O)N1
Stereo SMILES (OpenEye) C([C@@H]1[C@H]([C@@H]([C@@H](O1)N2C3=C(C(=O)NC(=N3)N)NC2=O)F)O)OP(=O)(O)O
InChI descriptor InChI=1S/C10H13FN5O8P/c11-3-5(17)2(1-23-25(20,21)22)24-8(3)16-6-4(13-10(16)19)7(18)15-9(12)14-6/h2-3,5,8,17H,1H2,(H,13,19)(H2,20,21,22)(H3,12,14,15,18)/t2-,3+,5-,8-/m1/s1
InChIKey descriptor UPQKRMLTATYYQE-HFZKREBBSA-N

Status Information

Last modified 2011-06-04
Created 2010-01-06
Release status REL
Model PDB code 3KTU
Processing site RCSB