PDB Chemical Component FDG

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for FDG

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P O5' 1.602 1.610
P OP1 1.483 1.480
P OP2 1.720 1.610
N1 C2 1.447 1.361
N1 C6 1.444 1.351
N1 HN1 1.000 0.970
C2 N2 1.347 1.372
C2 N3 1.342 1.316
N2 HN2 1.000 0.970
N2 HN2A 1.000 0.970
N3 C4 1.346 1.338
C4 C5 1.419 1.390
C4 N9 1.318 1.380
C5 C6 1.403 1.402
C5 N7 1.368 1.398
C6 O6 1.258 1.221
N7 C8 1.368 1.347
N7 HN7 1.000 0.970
C8 O8 1.250 1.217
C8 N9 1.339 1.346
N9 C1' 1.461 1.465
C1' C2' 1.511 1.541
C1' O4' 1.433 1.437
C1' H1' 1.100 1.091
C2' F2' 1.424 1.400
C2' C3' 1.522 1.547
C2' H2' 1.100 1.090
C3' O3' 1.472 1.430
C3' C4' 1.531 1.549
C3' H3' 1.100 1.090
O3' HO3' 0.951 0.967
C4' O4' 1.434 1.445
C4' C5' 1.510 1.531
C4' H4' 1.100 1.090
C5' O5' 1.429 1.429
C5' H5' 1.100 1.090
C5' H5'A 1.100 1.090
P OP3 1.484 1.610
OP3 HOP3 0.950 0.967
OP2 HOP2 0.950 0.967

Bond Angles for FDG

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O5' P OP1 111.5 109.5
O5' P OP2 82.1 109.5
P O5' C5' 120.5 123.0
O5' P OP3 110.3 109.5
OP1 P OP2 164.4 109.5
OP1 P OP3 119.7 109.5
OP3 P OP2 45.7 109.5
P OP2 HOP2 109.5 114.0
C2 N1 C6 119.1 120.1
C2 N1 HN1 120.4 120.0
N1 C2 N2 121.7 119.2
N1 C2 N3 118.4 121.7
C6 N1 HN1 120.5 119.9
N1 C6 C5 119.5 118.5
N1 C6 O6 120.2 120.8
N2 C2 N3 120.0 119.1
C2 N2 HN2 120.0 120.0
C2 N2 HN2A 120.0 120.0
C2 N3 C4 123.2 121.1
HN2 N2 HN2A 120.0 120.0
N3 C4 C5 122.3 119.5
N3 C4 N9 129.7 133.5
C5 C4 N9 108.0 106.9
C4 C5 C6 117.6 119.0
C4 C5 N7 107.3 106.9
C4 N9 C8 108.2 108.8
C4 N9 C1' 122.1 125.6
C6 C5 N7 135.1 134.0
C5 C6 O6 120.3 120.7
C5 N7 C8 105.3 107.9
C5 N7 HN7 127.3 126.1
C8 N7 HN7 127.3 126.0
N7 C8 O8 123.6 125.3
N7 C8 N9 111.2 109.5
O8 C8 N9 125.2 125.2
C8 N9 C1' 129.7 125.6
N9 C1' C2' 123.0 109.9
N9 C1' O4' 104.6 109.9
N9 C1' H1' 101.0 109.9
C2' C1' O4' 97.5 107.3
C2' C1' H1' 107.7 109.9
C1' C2' F2' 105.5 110.5
C1' C2' C3' 101.2 104.2
C1' C2' H2' 118.4 110.5
O4' C1' H1' 125.2 110.0
C1' O4' C4' 107.0 107.0
F2' C2' C3' 113.4 110.5
F2' C2' H2' 107.3 110.4
C3' C2' H2' 111.2 110.6
C2' C3' O3' 108.9 110.9
C2' C3' C4' 103.4 102.1
C2' C3' H3' 114.0 110.9
O3' C3' C4' 110.5 110.9
O3' C3' H3' 107.4 110.8
C3' O3' HO3' 109.5 114.0
C4' C3' H3' 112.5 111.0
C3' C4' O4' 103.2 103.5
C3' C4' C5' 115.3 110.6
C3' C4' H4' 110.0 110.7
O4' C4' C5' 109.6 110.6
O4' C4' H4' 115.6 110.6
C5' C4' H4' 103.6 110.7
C4' C5' O5' 107.3 109.5
C4' C5' H5' 110.2 109.5
C4' C5' H5'A 110.2 109.5
O5' C5' H5' 110.2 109.5
O5' C5' H5'A 110.2 109.5
H5' C5' H5'A 108.8 109.5
P OP3 HOP3 109.5 113.9

Torsion Angles for FDG

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP1 P O5' OP2 188.0 120.0
OP1 P O5' OP3 224.6 240.0
OP3 P O5' OP2 323.4 240.0
O5' P OP2 HOP2 180.0 300.0
C4' C5' O5' P 162.5 180.0
P O5' C5' H5' 42.5 60.0
P O5' C5' H5'A 282.5 300.0
O5' P OP3 HOP3 228.7 180.0
O5' P OP1 OP2 149.3 240.0
OP1 P O5' C5' 101.7 55.0
O5' P OP1 OP3 130.8 120.0
OP3 P OP1 OP2 18.5 120.0
OP1 P OP2 HOP2 331.3 180.0
OP1 P OP3 HOP3 0.0 300.0
O5' P OP2 OP1 208.7 120.0
OP2 P O5' C5' 273.7 295.0
O5' P OP2 OP3 231.3 240.0
OP1 P OP2 OP3 22.6 120.0
OP2 P OP3 HOP3 173.2 60.0
C6 N1 C2 HN1 180.0 180.4
C2 N1 C6 C5 0.1 359.9
C2 N1 C6 O6 180.5 180.0
N2 C2 N1 N3 179.8 179.9
N1 C2 N2 HN2 180.2 0.1
N1 C2 N2 HN2A 0.2 180.0
N1 C2 N3 C4 359.9 359.9
C2 N1 C6 HN1 180.0 179.6
C6 N1 C2 N2 179.8 180.0
C6 N1 C2 N3 0.0 0.1
C4 C5 C6 N1 359.9 0.1
N1 C6 C5 N7 180.4 180.0
C5 C6 N1 O6 179.6 179.9
C2 N1 HN1 C6 180.0 180.4
HN1 N1 C2 N2 359.8 359.6
HN1 N1 C2 N3 180.0 179.8
HN1 N1 C6 C5 180.1 180.3
HN1 N1 C6 O6 0.6 0.3
N2 C2 N1 C6 179.8 180.0
N2 C2 N1 HN1 359.8 359.6
N1 C2 N2 N3 180.2 180.1
N2 C2 N3 C4 180.1 180.0
HN2 N2 C2 HN2A 180.0 180.1
N3 C2 N1 C6 0.0 0.1
N3 C2 N1 HN1 180.0 179.8
N1 C2 N3 N2 179.8 179.9
N3 C2 N2 HN2 0.0 180.0
N3 C2 N2 HN2A 180.0 359.9
C2 N3 C4 C5 0.1 0.1
C2 N3 C4 N9 179.3 180.0
HN2 N2 C2 N3 0.0 180.0
C2 N2 HN2 HN2A 180.0 179.9
HN2A N2 C2 N3 180.0 359.9
C2 N2 HN2A HN2 180.0 180.1
C5 C4 N3 N9 180.8 180.0
N3 C4 C5 C6 0.1 360.0
N3 C4 C5 N7 179.6 180.0
N3 C4 N9 C8 180.6 180.0
N3 C4 N9 C1' 359.4 360.0
N1 C6 C5 C4 359.9 0.1
N3 C4 C5 N9 179.3 180.0
C5 C4 N9 C8 359.9 0.0
C5 C4 N9 C1' 178.7 180.0
C6 C5 C4 N7 180.4 179.9
C4 C5 C6 O6 179.4 180.0
C4 C5 N7 C8 359.7 359.9
C4 C5 N7 HN7 179.7 180.0
N3 C4 N9 C5 180.7 180.0
N9 C4 C5 C6 180.7 180.0
N9 C4 C5 N7 0.3 0.0
N7 C8 N9 C4 359.9 359.9
O8 C8 N9 C4 179.4 180.0
C8 N9 C4 C1' 181.2 180.1
C4 N9 C1' C2' 126.5 115.0
C4 N9 C1' O4' 235.6 232.8
C4 N9 C1' H1' 6.8 354.0
C5 C6 N1 HN1 180.1 180.3
N1 C6 C5 O6 180.4 180.1
C6 C5 C4 N9 180.7 180.0
C4 C5 C6 N7 179.4 180.1
C6 C5 N7 C8 179.1 180.0
C6 C5 N7 HN7 359.1 0.1
N7 C5 C4 N9 0.3 0.0
C4 C5 N7 C6 180.5 179.9
N7 C5 C6 O6 0.0 359.9
C8 N7 C5 HN7 180.0 179.9
C5 N7 C8 O8 180.8 180.0
C5 N7 C8 N9 0.2 0.1
O6 C6 N1 HN1 0.6 0.3
N1 C6 O6 C5 179.6 179.9
O6 C6 C5 N7 0.0 359.9
C4 N9 C8 N7 359.9 359.9
C5 N7 C8 HN7 180.0 180.1
O8 C8 N7 N9 180.5 180.0
N7 C8 N9 C1' 181.2 180.0
C5 N7 HN7 C8 180.0 179.9
HN7 N7 C8 O8 0.8 360.0
HN7 N7 C8 N9 180.3 180.0
C4 N9 C8 O8 179.4 180.0
O8 C8 N7 HN7 0.8 360.0
N7 C8 O8 N9 179.4 180.0
O8 C8 N9 C1' 0.7 0.0
C4 N9 C8 C1' 178.7 179.9
N9 C8 N7 HN7 180.3 180.0
N7 C8 N9 O8 180.5 180.0
C8 N9 C1' C2' 305.0 294.9
C8 N9 C1' O4' 54.2 52.8
C8 N9 C1' H1' 185.3 174.0
C4 N9 C1' C8 181.5 180.1
C2' C1' N9 O4' 250.8 242.2
C2' C1' N9 H1' 119.7 121.0
N9 C1' C2' F2' 42.9 2.8
N9 C1' C2' C3' 161.2 121.5
N9 C1' C2' H2' 282.9 240.3
O4' C1' N9 H1' 228.9 238.8
N9 C1' O4' C4' 181.9 214.1
N9 C1' C2' O4' 112.8 119.4
N9 C1' C2' H1' 243.5 239.0
O4' C1' C2' H1' 130.7 119.6
C2' C1' O4' C4' 308.9 333.5
F2' C2' C1' C3' 241.7 241.3
F2' C2' C1' H2' 120.0 122.5
C3' C2' C1' H2' 238.3 241.1
C1' C2' C3' O3' 87.4 139.1
C1' C2' C3' C4' 329.8 20.9
C1' C2' C3' H3' 207.3 262.7
N9 C1' O4' C2' 233.1 240.6
N9 C1' O4' H1' 115.1 121.1
C2' C1' O4' H1' 242.1 240.5
O4' C1' C2' F2' 290.1 243.3
O4' C1' C2' C3' 48.4 2.0
O4' C1' C2' H2' 170.1 120.9
C3' C4' O4' C1' 32.2 40.1
C1' O4' C4' C5' 155.5 158.6
C1' O4' C4' H4' 272.1 281.5
N9 C1' H1' C2' 130.1 121.0
N9 C1' H1' O4' 243.2 238.9
C2' C1' H1' O4' 113.1 117.9
H1' C1' C2' F2' 159.4 123.8
H1' C1' C2' C3' 277.7 242.4
H1' C1' C2' H2' 39.4 1.3
H1' C1' O4' C4' 66.8 93.0
F2' C2' C1' O4' 290.1 243.3
F2' C2' C1' H1' 159.4 123.8
C1' C2' F2' C3' 109.8 114.8
C1' C2' F2' H2' 232.9 237.5
C3' C2' F2' H2' 123.1 122.7
F2' C2' C3' O3' 199.8 257.8
F2' C2' C3' C4' 82.3 139.6
F2' C2' C3' H3' 319.7 21.3
C3' C2' C1' O4' 48.4 2.0
C3' C2' C1' H1' 277.7 242.4
C1' C2' C3' F2' 247.5 241.3
C1' C2' C3' H2' 126.6 118.8
F2' C2' C3' H2' 239.1 237.5
O3' C3' C2' C4' 117.6 118.2
O3' C3' C2' H3' 240.1 236.5
C2' C3' O3' HO3' 180.0 61.4
C4' C3' C2' H3' 122.5 118.3
C2' C3' C4' O4' 0.5 322.9
C2' C3' C4' C5' 241.0 204.5
C2' C3' C4' H4' 124.3 81.5
H2' C2' C1' O4' 170.1 120.9
H2' C2' C1' H1' 39.4 1.3
C1' C2' H2' F2' 119.1 122.5
C1' C2' H2' C3' 243.5 245.1
F2' C2' H2' C3' 124.5 122.6
H2' C2' C3' O3' 320.8 20.3
H2' C2' C3' C4' 203.2 262.1
H2' C2' C3' H3' 80.7 143.9
O3' C3' C2' H2' 320.8 20.3
C2' C3' O3' C4' 247.0 247.3
C2' C3' O3' H3' 123.9 123.6
C4' C3' O3' H3' 236.9 236.3
O3' C3' C4' O4' 244.0 204.7
O3' C3' C4' C5' 124.5 86.3
O3' C3' C4' H4' 7.9 323.3
C1' O4' C4' C3' 32.2 40.1
C4' C3' C2' H2' 203.2 262.1
C2' C3' C4' O3' 116.5 118.2
C2' C3' C4' H3' 236.5 241.8
O3' C3' C4' H3' 120.0 123.6
C4' C3' O3' HO3' 293.0 174.1
O4' C4' C3' C5' 119.5 118.5
O4' C4' C3' H4' 236.1 241.5
C5' C4' C3' H4' 116.6 123.0
C3' C4' C5' O5' 169.3 185.0
C3' C4' C5' H5' 289.2 304.9
C3' C4' C5' H5'A 49.3 65.0
H3' C3' C2' H2' 80.7 143.9
C2' C3' H3' O3' 239.2 236.4
C2' C3' H3' C4' 117.4 112.8
O3' C3' H3' C4' 238.2 236.4
H3' C3' O3' HO3' 56.1 297.8
H3' C3' C4' O4' 124.0 81.2
H3' C3' C4' C5' 4.5 322.7
H3' C3' C4' H4' 247.9 199.7
HO3' O3' C3' C4' 293.0 174.1
HO3' O3' C3' H3' 56.1 297.8
C4' O4' C1' H1' 66.8 93.0
O4' C4' C3' H3' 124.0 81.2
C3' C4' O4' C5' 236.6 241.5
C3' C4' O4' H4' 120.1 118.5
C5' C4' O4' H4' 243.5 237.0
O4' C4' C5' O5' 53.4 70.9
O4' C4' C5' H5' 173.3 190.9
O4' C4' C5' H5'A 293.4 310.9
P O5' C5' C4' 162.5 180.0
C5' C4' C3' H3' 4.5 322.7
C3' C4' C5' O4' 115.9 114.0
C3' C4' C5' H4' 239.8 237.0
O4' C4' C5' H4' 123.9 123.0
O5' C5' C4' H5' 240.0 240.0
O5' C5' C4' H5'A 120.0 120.0
H5' C5' C4' H5'A 240.0 240.0
H4' C4' C3' H3' 247.9 199.7
C3' C4' H4' O4' 243.7 245.9
C3' C4' H4' C5' 123.8 123.0
O4' C4' H4' C5' 240.1 237.1
H4' C4' C5' O5' 289.5 308.0
H4' C4' C5' H5' 49.4 67.9
H4' C4' C5' H5'A 169.5 188.0
C5' O5' P OP1 101.7 55.0
C5' O5' P OP2 273.7 295.0
C5' O5' P OP3 237.2 175.0
O5' C5' C4' H4' 289.5 308.0
C4' C5' O5' H5' 120.0 120.0
C4' C5' O5' H5'A 240.0 240.0
H5' C5' O5' H5'A 120.0 120.1
H5' C5' C4' H4' 49.4 67.9
C4' C5' H5' O5' 241.8 240.0
C4' C5' H5' H5'A 120.9 120.0
O5' C5' H5' H5'A 239.1 240.0
H5'A C5' C4' H4' 169.5 188.0
C4' C5' H5'A O5' 118.2 120.0
C4' C5' H5'A H5' 239.1 240.0
O5' C5' H5'A H5' 120.9 120.0
O5' P OP3 OP1 228.7 240.0
O5' P OP3 OP2 55.6 120.0
OP3 P O5' C5' 237.2 175.0
OP1 P OP3 OP2 186.8 240.0
OP3 P OP2 HOP2 308.7 60.0
HOP3 OP3 P OP2 173.2 60.0