PDB Chemical Component FDF
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for FDF
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O2A |
PA |
1.608 |
1.480 |
| O3A |
PA |
1.611 |
1.610 |
| PA |
O1A |
1.480 |
1.610 |
| PA |
O1 |
1.610 |
1.610 |
| O2B |
PB |
1.609 |
1.480 |
| O1B |
PB |
1.478 |
1.610 |
| O3B |
PB |
1.610 |
1.610 |
| PB |
O3A |
1.610 |
1.610 |
| C1 |
O1 |
1.428 |
1.429 |
| C1 |
C2 |
1.507 |
1.507 |
| C1 |
H1 |
1.100 |
1.089 |
| C1 |
H1A |
1.100 |
1.090 |
| O1A |
HO1A |
0.950 |
0.966 |
| O1B |
HO1B |
0.950 |
0.967 |
| C2 |
C3 |
1.309 |
1.311 |
| C2 |
H2 |
1.080 |
1.079 |
| C3 |
C4 |
1.507 |
1.507 |
| C3 |
C5 |
1.507 |
1.507 |
| O3B |
HO3B |
0.950 |
0.967 |
| C4 |
H4 |
1.100 |
1.089 |
| C4 |
H4A |
1.100 |
1.090 |
| C4 |
H4B |
1.100 |
1.089 |
| C6 |
C5 |
1.529 |
1.530 |
| C5 |
H5 |
1.100 |
1.090 |
| C5 |
H5A |
1.100 |
1.090 |
| C7 |
C6 |
1.508 |
1.508 |
| C6 |
H6 |
1.100 |
1.090 |
| C6 |
H6A |
1.100 |
1.090 |
| C8 |
C7 |
1.309 |
1.310 |
| C7 |
H7 |
1.080 |
1.080 |
| C9 |
C8 |
1.507 |
1.507 |
| C8 |
C10 |
1.507 |
1.507 |
| C11 |
C9 |
1.529 |
1.530 |
| C9 |
H9 |
1.100 |
1.090 |
| C9 |
H9A |
1.101 |
1.090 |
| C10 |
H10 |
1.100 |
1.090 |
| C10 |
H10A |
1.100 |
1.090 |
| C10 |
H10B |
1.100 |
1.091 |
| C11 |
C12 |
1.506 |
1.507 |
| C11 |
H11 |
1.100 |
1.089 |
| C11 |
H11A |
1.100 |
1.091 |
| C13 |
C12 |
1.311 |
1.310 |
| C12 |
H12 |
1.080 |
1.079 |
| C15 |
C13 |
1.506 |
1.507 |
| C13 |
C14 |
1.491 |
1.507 |
| F2 |
C14 |
1.374 |
1.398 |
| C14 |
H14 |
1.100 |
1.090 |
| C14 |
H14A |
1.100 |
1.091 |
| C15 |
F1 |
1.313 |
1.400 |
| C15 |
H15 |
1.100 |
1.090 |
| C15 |
H15A |
1.100 |
1.090 |
Bond Angles for FDF
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O1 |
PA |
O1A |
109.5 |
109.5 |
| PA |
O1A |
HO1A |
109.5 |
114.0 |
| PA |
O1 |
C1 |
106.9 |
123.0 |
| O2B |
PB |
O3A |
109.4 |
109.5 |
| O1B |
PB |
O3A |
109.5 |
109.5 |
| O1 |
C1 |
C2 |
109.5 |
109.5 |
| O1 |
C1 |
H1 |
109.5 |
109.5 |
| O1 |
C1 |
H1A |
109.5 |
109.5 |
| C2 |
C1 |
H1 |
109.4 |
109.5 |
| C2 |
C1 |
H1A |
109.4 |
109.4 |
| C1 |
C2 |
C3 |
120.0 |
120.0 |
| C1 |
C2 |
H2 |
120.0 |
120.0 |
| H1 |
C1 |
H1A |
109.5 |
109.5 |
| C3 |
C2 |
H2 |
120.0 |
120.0 |
| C2 |
C3 |
C4 |
120.0 |
120.0 |
| C2 |
C3 |
C5 |
120.0 |
120.0 |
| C4 |
C3 |
C5 |
120.0 |
120.0 |
| C3 |
C4 |
H4 |
109.5 |
109.5 |
| C3 |
C4 |
H4A |
109.4 |
109.4 |
| C3 |
C4 |
H4B |
109.5 |
109.5 |
| C3 |
C5 |
H5 |
109.5 |
109.5 |
| C3 |
C5 |
H5A |
109.4 |
109.5 |
| H4 |
C4 |
H4A |
109.5 |
109.5 |
| H4 |
C4 |
H4B |
109.4 |
109.5 |
| H4A |
C4 |
H4B |
109.5 |
109.5 |
| C6 |
C5 |
H5 |
109.5 |
109.5 |
| C6 |
C5 |
H5A |
109.4 |
109.5 |
| H5 |
C5 |
H5A |
109.5 |
109.5 |
| C7 |
C6 |
H6 |
109.5 |
109.4 |
| C7 |
C6 |
H6A |
109.4 |
109.5 |
| H6 |
C6 |
H6A |
109.5 |
109.5 |
| C8 |
C7 |
H7 |
120.0 |
120.0 |
| C9 |
C8 |
C10 |
120.0 |
120.0 |
| C8 |
C10 |
H10 |
109.5 |
109.5 |
| C8 |
C10 |
H10A |
109.5 |
109.5 |
| C8 |
C10 |
H10B |
109.4 |
109.5 |
| C11 |
C9 |
H9 |
109.5 |
109.5 |
| C11 |
C9 |
H9A |
109.5 |
109.5 |
| H9 |
C9 |
H9A |
109.5 |
109.5 |
| H10 |
C10 |
H10A |
109.5 |
109.4 |
| H10 |
C10 |
H10B |
109.5 |
109.5 |
| H10A |
C10 |
H10B |
109.5 |
109.5 |
| C12 |
C11 |
H11 |
109.5 |
109.5 |
| C12 |
C11 |
H11A |
109.4 |
109.4 |
| C11 |
C12 |
H12 |
120.0 |
120.0 |
| H11 |
C11 |
H11A |
109.5 |
109.4 |
| C13 |
C12 |
H12 |
120.0 |
120.0 |
| C13 |
C14 |
H14 |
109.4 |
109.5 |
| C13 |
C14 |
H14A |
109.4 |
109.5 |
| F2 |
C14 |
H14 |
109.4 |
109.5 |
| F2 |
C14 |
H14A |
109.4 |
109.5 |
| H14 |
C14 |
H14A |
109.5 |
109.4 |
| F1 |
C15 |
H15 |
104.6 |
109.5 |
| F1 |
C15 |
H15A |
101.0 |
109.4 |
| H15 |
C15 |
H15A |
122.6 |
109.5 |
Torsion Angles for FDF
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O2A |
PA |
O1A |
HO1A |
24.2 |
180.0 |
| O3A |
PA |
O1A |
HO1A |
264.3 |
60.0 |
| O1A |
PA |
O1 |
C1 |
236.5 |
295.0 |
| O1 |
PA |
O1A |
HO1A |
144.2 |
300.0 |
| PA |
O1 |
C1 |
C2 |
134.3 |
180.0 |
| PA |
O1 |
C1 |
H1 |
254.3 |
300.0 |
| PA |
O1 |
C1 |
H1A |
14.4 |
60.0 |
| O1B |
PB |
O2B |
O3A |
120.0 |
120.0 |
| O2B |
PB |
O1B |
O3A |
240.0 |
240.0 |
| C1 |
O1 |
PA |
O1A |
236.5 |
295.0 |
| C2 |
C1 |
O1 |
H1 |
240.0 |
240.0 |
| C2 |
C1 |
O1 |
H1A |
120.0 |
120.0 |
| O1 |
C1 |
C2 |
C3 |
111.8 |
227.5 |
| O1 |
C1 |
C2 |
H2 |
291.8 |
47.5 |
| H1 |
C1 |
O1 |
H1A |
239.9 |
240.0 |
| O1 |
C1 |
C2 |
H1 |
120.0 |
120.0 |
| O1 |
C1 |
C2 |
H1A |
240.0 |
240.0 |
| H1 |
C1 |
C2 |
H1A |
120.0 |
120.0 |
| C3 |
C2 |
C1 |
H2 |
180.0 |
180.0 |
| C1 |
C2 |
C3 |
C4 |
356.8 |
353.8 |
| C1 |
C2 |
C3 |
C5 |
176.9 |
173.8 |
| O1 |
C1 |
H1 |
C2 |
240.0 |
240.0 |
| O1 |
C1 |
H1 |
H1A |
120.0 |
120.0 |
| C2 |
C1 |
H1 |
H1A |
240.0 |
240.1 |
| H1 |
C1 |
C2 |
C3 |
351.9 |
107.5 |
| H1 |
C1 |
C2 |
H2 |
171.9 |
287.5 |
| O1 |
C1 |
H1A |
C2 |
120.0 |
120.0 |
| O1 |
C1 |
H1A |
H1 |
240.0 |
240.0 |
| C2 |
C1 |
H1A |
H1 |
120.0 |
120.0 |
| H1A |
C1 |
C2 |
C3 |
231.8 |
347.6 |
| H1A |
C1 |
C2 |
H2 |
51.8 |
167.5 |
| HO1B |
O1B |
PB |
O3A |
162.8 |
300.0 |
| C3 |
C2 |
C1 |
H1 |
351.9 |
107.5 |
| C3 |
C2 |
C1 |
H1A |
231.8 |
347.6 |
| C1 |
C2 |
C3 |
H2 |
180.0 |
180.0 |
| C4 |
C3 |
C2 |
C5 |
179.9 |
180.0 |
| C2 |
C3 |
C4 |
H4 |
237.9 |
84.6 |
| C2 |
C3 |
C4 |
H4A |
357.9 |
204.5 |
| C2 |
C3 |
C4 |
H4B |
117.9 |
324.5 |
| C2 |
C3 |
C5 |
H5 |
126.7 |
215.0 |
| C2 |
C3 |
C5 |
H5A |
246.7 |
335.0 |
| H2 |
C2 |
C1 |
H1 |
171.9 |
287.5 |
| H2 |
C2 |
C1 |
H1A |
51.8 |
167.5 |
| C1 |
C2 |
H2 |
C3 |
180.0 |
180.0 |
| H2 |
C2 |
C3 |
C4 |
176.8 |
173.9 |
| H2 |
C2 |
C3 |
C5 |
356.9 |
353.9 |
| C4 |
C3 |
C2 |
H2 |
176.8 |
173.9 |
| C2 |
C3 |
C4 |
C5 |
180.1 |
180.0 |
| C4 |
C3 |
C5 |
H5 |
306.8 |
35.0 |
| C4 |
C3 |
C5 |
H5A |
66.9 |
155.0 |
| H4 |
C4 |
C3 |
H4A |
240.0 |
240.0 |
| H4 |
C4 |
C3 |
H4B |
120.0 |
120.1 |
| H4A |
C4 |
C3 |
H4B |
240.0 |
240.0 |
| C5 |
C3 |
C2 |
H2 |
356.9 |
353.9 |
| C2 |
C3 |
C5 |
C4 |
179.9 |
180.0 |
| C5 |
C3 |
C4 |
H4 |
57.8 |
264.6 |
| C5 |
C3 |
C4 |
H4A |
177.8 |
24.6 |
| C5 |
C3 |
C4 |
H4B |
297.8 |
144.5 |
| C6 |
C5 |
C3 |
H5 |
240.0 |
240.0 |
| C6 |
C5 |
C3 |
H5A |
120.0 |
120.0 |
| H5 |
C5 |
C3 |
H5A |
240.0 |
240.0 |
| H4 |
C4 |
C3 |
C5 |
57.8 |
264.6 |
| C3 |
C4 |
H4 |
H4A |
120.0 |
119.9 |
| C3 |
C4 |
H4 |
H4B |
240.0 |
240.0 |
| H4A |
C4 |
H4 |
H4B |
120.0 |
120.1 |
| H4A |
C4 |
C3 |
C5 |
177.8 |
24.6 |
| C3 |
C4 |
H4A |
H4 |
240.0 |
240.0 |
| C3 |
C4 |
H4A |
H4B |
120.0 |
120.0 |
| H4 |
C4 |
H4A |
H4B |
240.0 |
239.9 |
| H4B |
C4 |
C3 |
C5 |
297.8 |
144.5 |
| C3 |
C4 |
H4B |
H4 |
120.0 |
120.0 |
| C3 |
C4 |
H4B |
H4A |
240.0 |
240.1 |
| H4 |
C4 |
H4B |
H4A |
120.0 |
120.0 |
| C3 |
C5 |
C6 |
H5 |
120.0 |
120.0 |
| C3 |
C5 |
C6 |
H5A |
240.0 |
240.0 |
| H5 |
C5 |
C6 |
H5A |
120.0 |
120.0 |
| C3 |
C5 |
H5 |
H5A |
120.0 |
120.0 |
| C6 |
C5 |
H5 |
H5A |
240.0 |
240.0 |
| C3 |
C5 |
H5A |
H5 |
240.0 |
240.0 |
| C6 |
C5 |
H5A |
H5 |
120.0 |
120.0 |
| C7 |
C6 |
C5 |
H5 |
139.3 |
60.0 |
| C7 |
C6 |
C5 |
H5A |
19.2 |
300.0 |
| H6 |
C6 |
C7 |
H6A |
120.0 |
120.0 |
| H6 |
C6 |
C5 |
H5 |
259.3 |
180.0 |
| H6 |
C6 |
C5 |
H5A |
139.3 |
60.0 |
| C7 |
C6 |
H6 |
H6A |
240.0 |
240.0 |
| H6A |
C6 |
C5 |
H5 |
19.3 |
300.0 |
| H6A |
C6 |
C5 |
H5A |
259.3 |
180.0 |
| C7 |
C6 |
H6A |
H6 |
120.0 |
120.0 |
| C8 |
C7 |
C6 |
H6 |
14.8 |
359.9 |
| C8 |
C7 |
C6 |
H6A |
254.8 |
239.9 |
| H7 |
C7 |
C6 |
H6 |
194.8 |
179.8 |
| H7 |
C7 |
C6 |
H6A |
74.8 |
59.9 |
| C9 |
C8 |
C7 |
H7 |
3.1 |
353.3 |
| C9 |
C8 |
C10 |
H10 |
219.7 |
264.0 |
| C9 |
C8 |
C10 |
H10A |
339.8 |
24.0 |
| C9 |
C8 |
C10 |
H10B |
99.7 |
144.0 |
| C10 |
C8 |
C7 |
H7 |
183.2 |
173.2 |
| H10 |
C10 |
C8 |
H10A |
240.0 |
240.0 |
| H10 |
C10 |
C8 |
H10B |
120.0 |
120.0 |
| H10A |
C10 |
C8 |
H10B |
240.0 |
240.0 |
| H9 |
C9 |
C11 |
H9A |
120.0 |
120.1 |
| H9 |
C9 |
C8 |
C10 |
66.9 |
35.0 |
| C11 |
C9 |
H9 |
H9A |
240.0 |
239.9 |
| H9A |
C9 |
C8 |
C10 |
187.0 |
155.0 |
| C11 |
C9 |
H9A |
H9 |
120.0 |
120.1 |
| C8 |
C10 |
H10 |
H10A |
120.0 |
120.0 |
| C8 |
C10 |
H10 |
H10B |
240.0 |
240.0 |
| H10A |
C10 |
H10 |
H10B |
120.0 |
119.9 |
| C8 |
C10 |
H10A |
H10 |
240.0 |
240.0 |
| C8 |
C10 |
H10A |
H10B |
120.0 |
120.0 |
| H10 |
C10 |
H10A |
H10B |
240.0 |
240.0 |
| C8 |
C10 |
H10B |
H10 |
120.0 |
120.0 |
| C8 |
C10 |
H10B |
H10A |
240.0 |
240.0 |
| H10 |
C10 |
H10B |
H10A |
120.0 |
119.9 |
| C12 |
C11 |
C9 |
H9 |
216.1 |
60.0 |
| C12 |
C11 |
C9 |
H9A |
96.1 |
299.9 |
| H11 |
C11 |
C12 |
H11A |
120.0 |
120.0 |
| C13 |
C12 |
C11 |
H12 |
180.0 |
179.9 |
| H11 |
C11 |
C9 |
H9 |
336.1 |
180.1 |
| H11 |
C11 |
C9 |
H9A |
216.1 |
60.0 |
| C12 |
C11 |
H11 |
H11A |
240.0 |
240.0 |
| H11 |
C11 |
C12 |
H12 |
201.7 |
177.3 |
| H11A |
C11 |
C9 |
H9 |
96.1 |
300.1 |
| H11A |
C11 |
C9 |
H9A |
336.1 |
180.0 |
| C12 |
C11 |
H11A |
H11 |
120.0 |
120.0 |
| H11A |
C11 |
C12 |
H12 |
81.6 |
57.3 |
| C13 |
C12 |
C11 |
H11 |
21.7 |
357.2 |
| C13 |
C12 |
C11 |
H11A |
261.6 |
237.2 |
| C11 |
C12 |
C13 |
H12 |
180.0 |
180.1 |
| H12 |
C12 |
C11 |
H11 |
201.7 |
177.3 |
| H12 |
C12 |
C11 |
H11A |
81.6 |
57.3 |
| C15 |
C13 |
C12 |
H12 |
181.5 |
178.4 |
| C15 |
C13 |
C14 |
H14 |
111.2 |
35.1 |
| C15 |
C13 |
C14 |
H14A |
231.2 |
155.0 |
| C14 |
C13 |
C12 |
H12 |
0.2 |
358.5 |
| F2 |
C14 |
C13 |
H14 |
240.0 |
239.9 |
| F2 |
C14 |
C13 |
H14A |
120.0 |
120.0 |
| H14 |
C14 |
C13 |
H14A |
240.0 |
240.1 |
| C13 |
C14 |
F2 |
H14 |
120.0 |
120.1 |
| C13 |
C14 |
F2 |
H14A |
240.0 |
240.0 |
| H14 |
C14 |
F2 |
H14A |
120.0 |
119.9 |
| C13 |
C14 |
H14 |
H14A |
119.9 |
119.9 |
| F2 |
C14 |
H14 |
H14A |
240.0 |
240.0 |
| C13 |
C14 |
H14A |
H14 |
240.0 |
240.1 |
| F2 |
C14 |
H14A |
H14 |
120.0 |
120.0 |
| H15 |
C15 |
F1 |
H15A |
128.1 |
120.0 |
| F1 |
C15 |
H15 |
H15A |
246.4 |
240.0 |
| F1 |
C15 |
H15A |
H15 |
115.4 |
120.0 |