Atom Nomenclature for FC5

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for FC5

Atom Name (V3) Atom Name (V2)
S1 S1
CAF C1
CAI C2
CAH C3
CAN C4
CAM C5
OAK O1
CAO C6
CAL C7
CAG C8
CAJ C9
OAD O2
HAI H1
HAH0 H2
HAM H3
HAL H4
HAG H5
HOAD H6