Atom Nomenclature for FB8

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for FB8

Atom Name (V3) Atom Name (V2)
C4 C1
C14 C2
C5 C3
C6 C4
C11 C5
C7 C6
C8 C7
C9 C8
C10 C9
C12 C10
C13 C11
N1 N1
N2 N2
C3 C12
N3 N3
C1 C13
C2 C14
S1 S1
O1 O1
O2 O2
C15 C15
N4 N4
N5 N5
C16 C16
C17 C17
C18 C18
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H12 H12
H14 H14
H15 H15
H16 H16
H17 H17
H19 H19
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27