Atom Nomenclature for FB

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for FB

Atom Name (V3) Atom Name (V2)
O12 O12
C12 C12
C5A C5A
C5 C5
C6 C6
O6 O6
N10 N10
C9 C9
O9 O9
C4 C4
C3 C3
O2 O2
C1 C1
N8 N8
C7 C7
O7 O7
C1A C1A
O1A O1A
C2A C2A
C2B C2B
O2A O2A
C3A C3A
O3A O3A
H12 H12
H5A H5A
HO6 HO6
H10 H10
H41 1H4
H42 2H4
H31 1H3
H32 2H3
HN8 HN8
H1A H1A
H1O H1O
HB1 1HB
HB2 2HB
HB3 3HB
H2O H2O
HA1 1HA
HA2 2HA
H3O H3O