Atom Nomenclature for F9K

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for F9K

Atom Name (V3) Atom Name (V2)
F1 F1
C2 C2
C3 C3
C4 C4
C5 C5
C6 C6
C7 C7
C8 C8
N9 N9
C10 C10
C11 C11
O12 O12
O13 O13
C14 C14
C15 C15
N16 N16
C17 C17
C18 C18
C19 C19
N20 N20
C21 C21
C22 C22
C23 C23
C24 C24
C25 C25
C26 C26
N27 N27
S28 S28
C29 C29
C30 C30
C31 C31
C32 C32
C33 C33
C34 C34
F35 F35
N36 N36
C37 C37
C38 C38
C39 C39
C40 C40
C41 C41
C42 C42
C43 C43
C44 C44
C45 C45
O46 O46
N47 N47
C48 C48
O49 O49
C50 C50
C51 C51
C52 C52
C53 C53
N54 N54
C55 C55
O56 O56
C57 C57
O58 O58
O59 O59
O60 O60
O61 O61
H7 H7
H101 H101
H102 H102
H5 H5
H81C H81C
H82C H82C
H6 H6
H14 H14
H151 H151
H152 H152
H181 H181
H182 H182
H17 H17
H20 H20
H22 H22
H231 H231
H232 H232
H24 H24
H251 H251
H252 H252
H27 H27
H34 H34
H31 H31
H36 H36
H32 H32
H371 H371
H372 H372
H381 H381
H382 H382
H391 H391
H392 H392
H401 H401
H402 H402
H411 H411
H412 H412
H421 H421
H422 H422
H431 H431
H432 H432
H44 H44
H47 H47
H50 H50
H511 H511
H512 H512
H521 H521
H522 H522
H531 H531
H532 H532
H571 H571
H572 H572
H573 H573