Atom Nomenclature for F8V

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for F8V

Atom Name (V3) Atom Name (V2)
O1 O1
C20 C1
N4 N1
C24 C2
C23 C3
N5 N2
C25 C4
C30 C5
C29 C6
C28 C7
C31 C8
N7 N3
C34 C9
C33 C10
C32 C11
N6 N4
C27 C12
C26 C13
C22 C14
C21 C15
C19 C16
N N5
C1 C17
C2 C18
C3 C19
C C20
S S1
C18 C21
C4 C22
O O2
N1 N6
C5 C23
C10 C24
C9 C25
C11 C26
N2 N7
N3 N8
C8 C27
C7 C28
C6 C29
C12 C30
C17 C31
C16 C32
C15 C33
F F1
C14 C34
C13 C35
H28 H1
H27 H2
H26 H3
H25 H4
H32 H5
H31 H6
H35 H7
H34 H8
H33 H9
H30 H10
H29 H11
H24 H12
H23 H13
H22 H14
H21 H15
H19 H16
H20 H17
H4 H19
H5 H20
H6 H21
H7 H22
H2 H23
H3 H24
H18 H25
H17 H26
H16 H27
H8 H28
H11 H29
H1 H30
H10 H31
H9 H32
H15 H33
H14 H34
H13 H35
H12 H36