Atom Nomenclature for F87

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for F87

Atom Name (V3) Atom Name (V2)
N2 N1
C3 C1
C4 C2
C5 C3
C6 C4
C7 C5
C8 C6
C9 C7
C10 C8
C11 C9
C12 C10
C15 C11
C16 C12
C17 C13
C18 C14
C19 C15
C20 C16
C21 C17
N1 N2
C1 C18
C2 C19
N3 N3
N4 N4
O1 O1
C13 C20
C14 C21
N5 N5
F1 F1
F2 F2
O2 O2
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23