PDB Chemical Component F7K

Ideal Model

Chemical Description

Name 2-azanyl-9-[(1~{S},2~{R},4~{S},6~{S},8~{R})-2,6-bis(oxidanyl)-9-oxatricyclo[4.3.0.0^{2,4}]nonan-8-yl]-1~{H}-purin-6-one
Formula C13 H15 N5 O4
Formal charge 0
Molecular weight 305.289 g/mol
Component type DNA linking
Nonstandard Parent Id DG

Chemical features

Atom count 37
Chiral atom count 5
Chiral atoms C5' C4' C1' C3' C6'
Bond count 41
Aromatic bond count 5

Chemical Identifiers

Systematic name (OpenEye OEToolkits) 2-azanyl-9-[(1~{S},2~{R},4~{S},6~{S},8~{R})-2,6-bis(oxidanyl)-9-oxatricyclo[4.3.0.0^{2,4}]nonan-8-yl]-1~{H}-purin-6-one

Chemical Descriptors

Stereo SMILES (CACTVS) NC1=Nc2n(cnc2C(=O)N1)[C@H]3C[C@@]4(O)C[C@@H]5C[C@]5(O)[C@H]4O3
SMILES (CACTVS) NC1=Nc2n(cnc2C(=O)N1)[CH]3C[C]4(O)C[CH]5C[C]5(O)[CH]4O3
Stereo SMILES (OpenEye) c1nc2c(n1[C@H]3C[C@]4(C[C@@H]5C[C@@]5([C@H]4O3)O)O)N=C(NC2=O)N
InChI descriptor InChI=1S/C13H15N5O4/c14-11-16-8-7(9(19)17-11)15-4-18(8)6-3-12(20)1-5-2-13(5,21)10(12)22-6/h4-6,10,20-21H,1-3H2,(H3,14,16,17,19)/t5-,6-,10+,12+,13-/m1/s1
InChIKey descriptor AFXULUSIHCQUMJ-CFFIBIDHSA-N

Status Information

Last modified 2019-05-06
Created 2018-06-07
Release status REL
Model PDB code 6GN4
Processing site EBI