PDB Chemical Component F7K
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for F7K
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C6' |
C8' |
1.498 |
1.570 |
| C6' |
C7' |
1.519 |
1.541 |
| C6' |
C5' |
1.503 |
1.537 |
| C8' |
C5' |
1.499 |
1.530 |
| C7' |
C3' |
1.552 |
1.545 |
| C5' |
O5' |
1.409 |
1.429 |
| C5' |
C4' |
1.522 |
1.540 |
| O3' |
C3' |
1.426 |
1.429 |
| C3' |
C4' |
1.519 |
1.559 |
| C3' |
C2' |
1.527 |
1.544 |
| O6 |
C6 |
1.231 |
1.220 |
| C4' |
O4' |
1.433 |
1.439 |
| N7 |
C5 |
1.390 |
1.355 |
| N7 |
C8 |
1.306 |
1.301 |
| C6 |
C5 |
1.438 |
1.414 |
| C6 |
N1 |
1.409 |
1.352 |
| C2' |
C1' |
1.526 |
1.540 |
| C5 |
C4 |
1.382 |
1.400 |
| C8 |
N9 |
1.371 |
1.365 |
| N1 |
C2 |
1.394 |
1.363 |
| C4 |
N9 |
1.372 |
1.369 |
| C4 |
N3 |
1.370 |
1.338 |
| N9 |
C1' |
1.484 |
1.464 |
| C2 |
N3 |
1.351 |
1.315 |
| C2 |
N2 |
1.340 |
1.372 |
| O4' |
C1' |
1.431 |
1.436 |
| C8 |
H8 |
1.080 |
1.080 |
| O5' |
HO5' |
0.950 |
0.968 |
| C4' |
H4' |
1.100 |
1.091 |
| C1' |
H1' |
1.100 |
1.090 |
| N1 |
H1 |
1.000 |
0.971 |
| N2 |
H21 |
1.000 |
0.970 |
| N2 |
H22 |
1.000 |
0.970 |
| C2' |
H2'' |
1.100 |
1.090 |
| C2' |
H2' |
1.100 |
1.091 |
| C7' |
H7'' |
1.100 |
1.090 |
| C7' |
H7' |
1.100 |
1.090 |
| C6' |
H6' |
1.100 |
1.090 |
| C8' |
H8'' |
1.100 |
1.091 |
| C8' |
H8' |
1.100 |
1.090 |
| O3' |
H2 |
0.950 |
0.967 |
Bond Angles for F7K
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C8' |
C6' |
H6' |
119.6 |
119.1 |
| C6' |
C8' |
H8'' |
120.0 |
117.4 |
| C6' |
C8' |
H8' |
119.9 |
117.5 |
| C6' |
C7' |
H7'' |
110.0 |
110.4 |
| C6' |
C7' |
H7' |
110.0 |
110.5 |
| C5' |
O5' |
HO5' |
109.5 |
113.9 |
| C5' |
C4' |
O4' |
109.6 |
109.0 |
| C5' |
C4' |
H4' |
109.7 |
112.6 |
| C3' |
C4' |
H4' |
109.8 |
113.4 |
| C3' |
C2' |
H2'' |
110.6 |
110.4 |
| C3' |
C2' |
H2' |
110.7 |
110.4 |
| O6 |
C6 |
N1 |
120.1 |
120.8 |
| C4' |
O4' |
C1' |
110.3 |
107.7 |
| O4' |
C4' |
H4' |
111.0 |
112.7 |
| N7 |
C8 |
H8 |
122.9 |
125.1 |
| C6 |
N1 |
H1 |
117.7 |
119.8 |
| C2' |
C1' |
H1' |
109.1 |
109.8 |
| C5 |
C4 |
N9 |
106.3 |
106.1 |
| C5 |
C4 |
N3 |
127.7 |
119.7 |
| C8 |
N9 |
C4 |
105.3 |
107.5 |
| C8 |
N9 |
C1' |
129.3 |
126.3 |
| N9 |
C8 |
H8 |
122.9 |
125.1 |
| N1 |
C2 |
N3 |
123.0 |
121.9 |
| N1 |
C2 |
N2 |
116.9 |
119.0 |
| N9 |
C4 |
N3 |
126.0 |
134.2 |
| C4 |
N9 |
C1' |
125.3 |
126.2 |
| C2 |
N3 |
C4 |
113.1 |
121.1 |
| N9 |
C1' |
H1' |
109.7 |
109.9 |
| N2 |
C2 |
N3 |
120.1 |
119.1 |
| C2 |
N2 |
H21 |
120.0 |
119.9 |
| C2 |
N2 |
H22 |
120.0 |
120.0 |
| O4' |
C1' |
H1' |
110.4 |
109.9 |
| H21 |
N2 |
H22 |
120.0 |
120.1 |
| H2'' |
C2' |
H2' |
109.5 |
110.5 |
| H7'' |
C7' |
H7' |
109.5 |
110.3 |
| H8'' |
C8' |
H8' |
109.5 |
115.5 |
Torsion Angles for F7K
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C8' |
C6' |
C7' |
H7'' |
176.0 |
281.4 |
| C8' |
C6' |
C7' |
H7' |
296.7 |
159.1 |
| H8'' |
C8' |
C6' |
H8' |
219.0 |
144.8 |
| H7'' |
C7' |
C6' |
H7' |
239.3 |
122.3 |
| C6' |
C5' |
O5' |
HO5' |
180.0 |
179.3 |
| C6' |
C5' |
C4' |
H4' |
130.8 |
145.2 |
| C8' |
C5' |
O5' |
HO5' |
250.2 |
251.8 |
| C8' |
C5' |
C4' |
H4' |
66.1 |
78.8 |
| C7' |
C3' |
C4' |
H4' |
224.3 |
201.4 |
| C7' |
C3' |
C2' |
H2'' |
25.1 |
151.2 |
| C7' |
C3' |
C2' |
H2' |
146.7 |
28.7 |
| C4' |
C5' |
O5' |
HO5' |
45.1 |
45.3 |
| C3' |
C4' |
C5' |
H4' |
240.3 |
236.5 |
| C5' |
C4' |
O4' |
C1' |
124.9 |
148.7 |
| O4' |
C4' |
C5' |
H4' |
122.2 |
125.9 |
| O3' |
C3' |
C4' |
H4' |
343.9 |
325.6 |
| O3' |
C3' |
C2' |
H2'' |
258.0 |
23.0 |
| O3' |
C3' |
C2' |
H2' |
19.6 |
260.5 |
| C5' |
C4' |
C3' |
H4' |
119.7 |
123.0 |
| O4' |
C4' |
C3' |
H4' |
238.5 |
237.2 |
| C2' |
C3' |
C4' |
H4' |
104.1 |
88.6 |
| C3' |
C2' |
C1' |
H1' |
222.8 |
243.5 |
| H2'' |
C2' |
C3' |
H2' |
238.5 |
122.5 |
| O6 |
C6 |
N1 |
H1 |
0.1 |
359.9 |
| C5' |
C4' |
O4' |
H4' |
238.6 |
234.2 |
| C3' |
C4' |
O4' |
H4' |
120.7 |
123.2 |
| C4' |
O4' |
C1' |
H1' |
125.8 |
93.6 |
| C5 |
N7 |
C8 |
H8 |
180.1 |
180.3 |
| N7 |
C5 |
C4 |
N3 |
180.0 |
180.0 |
| N9 |
C8 |
N7 |
H8 |
180.0 |
179.7 |
| C6 |
C5 |
C4 |
N9 |
179.9 |
180.0 |
| C6 |
C5 |
C4 |
N3 |
359.9 |
359.7 |
| C6 |
N1 |
C2 |
N3 |
0.0 |
0.3 |
| C6 |
N1 |
C2 |
N2 |
180.0 |
179.7 |
| N9 |
C1' |
C2' |
H1' |
239.1 |
239.0 |
| O4' |
C1' |
C2' |
H1' |
120.0 |
119.4 |
| C8 |
N9 |
C4 |
C5 |
0.1 |
359.6 |
| N9 |
C4 |
C5 |
N3 |
180.0 |
180.4 |
| C5 |
C4 |
N9 |
C1' |
180.5 |
179.7 |
| C2 |
N3 |
C4 |
C5 |
0.3 |
0.7 |
| N7 |
C8 |
N9 |
H8 |
180.0 |
180.3 |
| C5 |
C4 |
N9 |
C8 |
0.1 |
359.6 |
| C8 |
N9 |
C4 |
N3 |
180.1 |
180.0 |
| C4 |
N9 |
C8 |
C1' |
180.4 |
180.0 |
| C8 |
N9 |
C1' |
H1' |
122.0 |
144.6 |
| N1 |
C2 |
N3 |
C4 |
359.7 |
359.3 |
| N2 |
C2 |
N1 |
N3 |
180.0 |
179.4 |
| N1 |
C2 |
N2 |
H21 |
180.0 |
180.6 |
| N1 |
C2 |
N2 |
H22 |
0.0 |
0.6 |
| C5 |
C4 |
N9 |
N3 |
180.0 |
179.6 |
| C8 |
N9 |
C4 |
C1' |
179.6 |
180.0 |
| C4 |
N9 |
C8 |
H8 |
179.9 |
180.0 |
| C2 |
N3 |
C4 |
N9 |
180.4 |
180.2 |
| C4 |
N9 |
C1' |
H1' |
301.5 |
324.5 |
| C5 |
C4 |
N3 |
N9 |
180.0 |
180.5 |
| N3 |
C4 |
N9 |
C1' |
0.5 |
0.1 |
| N2 |
C2 |
N3 |
C4 |
179.7 |
179.9 |
| C2' |
C1' |
N9 |
H1' |
120.6 |
121.0 |
| C8 |
N9 |
C1' |
C4 |
180.5 |
180.1 |
| C1' |
N9 |
C8 |
H8 |
359.5 |
360.0 |
| C1' |
N9 |
C4 |
N3 |
0.5 |
0.1 |
| O4' |
C1' |
N9 |
H1' |
239.1 |
239.0 |
| C5 |
C4 |
N3 |
C2 |
0.3 |
0.7 |
| N1 |
C2 |
N3 |
N2 |
180.0 |
179.4 |
| N9 |
C4 |
N3 |
C2 |
180.4 |
180.2 |
| N3 |
C2 |
N2 |
H21 |
0.0 |
0.0 |
| N3 |
C2 |
N2 |
H22 |
180.0 |
180.0 |
| N1 |
C2 |
N2 |
N3 |
180.0 |
180.6 |
| H21 |
N2 |
C2 |
H22 |
180.0 |
180.0 |
| C1' |
O4' |
C4' |
H4' |
246.3 |
274.6 |
| C2' |
C1' |
O4' |
H1' |
240.8 |
240.6 |
| C8 |
N9 |
C1' |
O4' |
1.0 |
23.6 |
| C4 |
N9 |
C1' |
O4' |
180.6 |
203.5 |
| N9 |
C1' |
O4' |
H1' |
120.4 |
121.0 |
| H8 |
C8 |
N9 |
C4 |
179.9 |
180.0 |
| H8 |
C8 |
N9 |
C1' |
359.5 |
360.0 |
| C5' |
C4' |
H4' |
O4' |
121.4 |
123.9 |
| H4' |
C4' |
O4' |
C1' |
246.3 |
274.6 |
| H1 |
N1 |
C2 |
N3 |
180.1 |
180.4 |
| H1 |
N1 |
C2 |
N2 |
0.1 |
359.7 |
| H21 |
N2 |
C2 |
N3 |
0.0 |
0.0 |
| C2 |
N2 |
H21 |
H22 |
180.0 |
180.0 |
| H22 |
N2 |
C2 |
N3 |
180.0 |
180.0 |
| C2 |
N2 |
H22 |
H21 |
180.0 |
180.0 |
| C3' |
C2' |
H2'' |
H2' |
122.2 |
237.6 |
| H2'' |
C2' |
C1' |
H1' |
103.5 |
2.3 |
| C3' |
C2' |
H2' |
H2'' |
237.8 |
122.4 |
| H2' |
C2' |
C1' |
H1' |
342.0 |
124.8 |
| C6' |
C7' |
H7'' |
H7' |
121.0 |
237.6 |
| C6' |
C7' |
H7' |
H7'' |
239.0 |
122.3 |
| H6' |
C6' |
C8' |
H8'' |
218.5 |
4.3 |
| H6' |
C6' |
C8' |
H8' |
359.5 |
219.5 |
| H6' |
C6' |
C7' |
H7'' |
330.2 |
76.5 |
| H6' |
C6' |
C7' |
H7' |
90.9 |
314.2 |
| H8'' |
C8' |
C6' |
H6' |
218.5 |
4.3 |
| C6' |
C8' |
H8'' |
H8' |
144.7 |
214.5 |
| H8' |
C8' |
C6' |
H6' |
359.5 |
219.5 |
| C6' |
C8' |
H8' |
H8'' |
215.3 |
145.5 |