Atom Nomenclature for F7K

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for F7K

Atom Name (V3) Atom Name (V2)
C8 C1
C2 C2
C4 C3
C5 C4
C6 C5
O5' O1
C5' C6
C4' C7
O4' O2
C1' C8
N9 N1
N7 N2
O6 O3
N1 N3
N2 N4
N3 N5
C3' C9
C2' C10
C7' C11
C6' C12
C8' C13
O3' O4
H8 H1
HO5' H2
H4' H3
H1' H4
H1 H5
H21 H6
H22 H7
H2'' H8
H2' H9
H7'' H10
H7' H11
H6' H12
H8'' H13
H8' H14
H2 H15