PDB Chemical Component F6G
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for F6G
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O2B |
PB |
1.486 |
1.481 |
| O3' |
C3' |
1.490 |
1.429 |
| C3' |
C2' |
1.283 |
1.545 |
| C3' |
C4' |
1.631 |
1.545 |
| C2' |
C1' |
1.576 |
1.545 |
| O1A |
PA |
1.527 |
1.480 |
| O3A |
PB |
1.605 |
1.610 |
| O3A |
PA |
1.621 |
1.609 |
| O5' |
PA |
1.692 |
1.610 |
| O5' |
C5' |
1.415 |
1.429 |
| PB |
O1B |
1.544 |
1.610 |
| PB |
O3B |
1.704 |
1.610 |
| PA |
O2A |
1.530 |
1.610 |
| C4' |
C5' |
1.547 |
1.530 |
| C4' |
O4' |
1.285 |
1.444 |
| C1' |
N1 |
1.404 |
1.464 |
| C1' |
O4' |
1.523 |
1.444 |
| O3B |
PG |
1.704 |
1.610 |
| O2 |
C2 |
1.208 |
1.215 |
| N1 |
C2 |
1.372 |
1.351 |
| N1 |
C6 |
1.374 |
1.472 |
| C2 |
N3 |
1.346 |
1.342 |
| C6 |
N03 |
1.367 |
1.470 |
| N3 |
C4 |
1.359 |
1.374 |
| N03 |
C4 |
1.322 |
1.302 |
| C4 |
N4 |
1.447 |
1.375 |
| O2G |
PG |
1.538 |
1.480 |
| PG |
O1G |
1.523 |
1.610 |
| PG |
O3G |
1.506 |
1.610 |
| C6 |
H1 |
1.100 |
1.090 |
| C6 |
H2 |
1.100 |
1.090 |
| N4 |
H3 |
1.000 |
0.970 |
| N4 |
H4 |
1.000 |
0.969 |
| C1' |
H5 |
1.100 |
1.090 |
| C2' |
H6 |
1.100 |
1.090 |
| C2' |
H7 |
1.100 |
1.089 |
| C3' |
H8 |
1.100 |
1.090 |
| O3' |
H9 |
0.950 |
0.967 |
| C4' |
H10 |
1.100 |
1.090 |
| C5' |
H11 |
1.100 |
1.090 |
| C5' |
H12 |
1.100 |
1.090 |
| O2A |
H13 |
0.950 |
0.966 |
| O1B |
H14 |
0.950 |
0.966 |
| O3G |
H15 |
0.950 |
0.967 |
| O1G |
H16 |
0.950 |
0.967 |
| N3 |
H17 |
1.000 |
0.970 |
Bond Angles for F6G
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O2B |
PB |
O3B |
121.4 |
109.4 |
| O3' |
C3' |
C4' |
103.3 |
110.5 |
| O3' |
C3' |
H8 |
109.9 |
110.5 |
| C3' |
C2' |
H6 |
110.0 |
110.5 |
| C3' |
C2' |
H7 |
110.0 |
110.7 |
| C3' |
C4' |
C5' |
115.3 |
110.4 |
| C3' |
C4' |
O4' |
106.6 |
104.8 |
| C4' |
C3' |
H8 |
108.1 |
110.5 |
| C3' |
C4' |
H10 |
105.8 |
110.3 |
| C2' |
C1' |
O4' |
102.2 |
104.8 |
| C2' |
C1' |
H5 |
107.1 |
110.5 |
| O1A |
PA |
O2A |
110.3 |
109.5 |
| O3A |
PB |
O1B |
109.5 |
109.5 |
| O3A |
PB |
O3B |
102.3 |
109.5 |
| O5' |
PA |
O2A |
115.1 |
109.4 |
| O5' |
C5' |
H11 |
109.3 |
109.5 |
| O5' |
C5' |
H12 |
109.3 |
109.5 |
| O1B |
PB |
O3B |
114.0 |
109.5 |
| PB |
O1B |
H14 |
109.5 |
114.0 |
| PB |
O3B |
PG |
120.1 |
134.0 |
| PA |
O2A |
H13 |
109.5 |
114.0 |
| C5' |
C4' |
O4' |
112.1 |
110.4 |
| C5' |
C4' |
H10 |
106.7 |
110.4 |
| C4' |
C5' |
H11 |
109.3 |
109.5 |
| C4' |
C5' |
H12 |
109.3 |
109.5 |
| C1' |
O4' |
C4' |
109.7 |
105.3 |
| O4' |
C4' |
H10 |
110.2 |
110.5 |
| O4' |
C1' |
H5 |
107.7 |
110.3 |
| O3B |
PG |
O1G |
107.8 |
109.5 |
| O3B |
PG |
O3G |
118.2 |
109.5 |
| O2 |
C2 |
N3 |
118.2 |
119.6 |
| N1 |
C2 |
N3 |
120.7 |
120.9 |
| N1 |
C6 |
H1 |
105.9 |
107.8 |
| N1 |
C6 |
H2 |
105.9 |
107.8 |
| C2 |
N3 |
C4 |
121.6 |
122.9 |
| C2 |
N3 |
H17 |
119.2 |
118.5 |
| N03 |
C6 |
H1 |
105.9 |
107.8 |
| N03 |
C6 |
H2 |
105.9 |
107.9 |
| C4 |
N4 |
H3 |
120.0 |
120.0 |
| C4 |
N4 |
H4 |
120.0 |
120.0 |
| O3G |
PG |
O1G |
100.6 |
109.5 |
| PG |
O1G |
H16 |
109.5 |
114.0 |
| PG |
O3G |
H15 |
109.5 |
114.0 |
| H1 |
C6 |
H2 |
109.5 |
107.7 |
| H3 |
N4 |
H4 |
120.0 |
120.0 |
| H6 |
C2' |
H7 |
109.5 |
110.5 |
| H11 |
C5' |
H12 |
109.5 |
109.4 |
Torsion Angles for F6G
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O3A |
PB |
O2B |
O3B |
248.5 |
239.9 |
| O1B |
PB |
O2B |
O3B |
134.0 |
120.0 |
| O2B |
PB |
O1B |
H14 |
360.0 |
180.0 |
| O2B |
PB |
O3B |
PG |
196.4 |
45.0 |
| O3' |
C3' |
C2' |
H6 |
202.9 |
0.0 |
| O3' |
C3' |
C2' |
H7 |
323.6 |
237.4 |
| O3' |
C3' |
C4' |
C5' |
143.5 |
98.6 |
| O3' |
C3' |
C4' |
O4' |
268.6 |
217.4 |
| C4' |
C3' |
O3' |
H8 |
244.9 |
237.3 |
| O3' |
C3' |
C4' |
H10 |
25.9 |
336.3 |
| C3' |
C2' |
C1' |
O4' |
21.6 |
24.0 |
| C3' |
C2' |
C1' |
H5 |
268.5 |
265.1 |
| H6 |
C2' |
C3' |
H7 |
239.3 |
122.7 |
| O3' |
C3' |
C4' |
H8 |
116.4 |
122.7 |
| C4' |
C3' |
C2' |
H6 |
89.5 |
241.4 |
| C4' |
C3' |
C2' |
H7 |
210.2 |
118.7 |
| C5' |
C4' |
C3' |
O4' |
235.0 |
241.2 |
| C5' |
C4' |
C3' |
H10 |
117.6 |
122.2 |
| C3' |
C4' |
C5' |
H11 |
274.6 |
305.0 |
| C3' |
C4' |
C5' |
H12 |
154.9 |
65.0 |
| C1' |
O4' |
C4' |
C3' |
343.7 |
40.5 |
| O4' |
C4' |
C3' |
H10 |
242.7 |
241.1 |
| C2' |
C1' |
O4' |
C4' |
359.7 |
319.5 |
| O4' |
C1' |
C2' |
H5 |
113.1 |
118.8 |
| O5' |
PA |
O1A |
O2A |
128.3 |
119.9 |
| O1A |
PA |
O2A |
H13 |
0.0 |
180.0 |
| O2B |
PB |
O3A |
O3B |
125.7 |
120.0 |
| O1B |
PB |
O3A |
O3B |
238.7 |
240.0 |
| O3A |
PB |
O1B |
H14 |
251.7 |
60.0 |
| O3A |
PB |
O3B |
PG |
306.9 |
165.0 |
| O3A |
PA |
O2A |
H13 |
118.9 |
300.1 |
| O1A |
PA |
O5' |
O2A |
234.3 |
240.0 |
| PA |
O5' |
C5' |
H11 |
280.9 |
59.9 |
| PA |
O5' |
C5' |
H12 |
40.7 |
300.0 |
| O5' |
PA |
O2A |
H13 |
234.4 |
60.1 |
| O5' |
C5' |
C4' |
O4' |
272.6 |
69.6 |
| O5' |
C5' |
C4' |
H10 |
151.9 |
307.2 |
| C4' |
C5' |
O5' |
H11 |
239.9 |
120.0 |
| C4' |
C5' |
O5' |
H12 |
120.1 |
240.0 |
| H11 |
C5' |
O5' |
H12 |
240.2 |
120.0 |
| O2B |
PB |
O1B |
O3B |
222.2 |
240.0 |
| O3A |
PB |
O1B |
O3B |
113.9 |
120.1 |
| O1B |
PB |
O3B |
PG |
65.0 |
285.0 |
| O3A |
PB |
O3B |
O1B |
241.9 |
240.0 |
| O3B |
PB |
O1B |
H14 |
137.8 |
300.0 |
| PB |
O3B |
PG |
O1G |
324.8 |
200.0 |
| PB |
O3B |
PG |
O3G |
211.8 |
80.0 |
| C3' |
C4' |
C5' |
O4' |
122.1 |
115.4 |
| C5' |
C4' |
C3' |
H8 |
27.1 |
335.8 |
| C3' |
C4' |
C5' |
H10 |
242.8 |
237.8 |
| O5' |
C5' |
C4' |
H11 |
120.1 |
240.0 |
| O5' |
C5' |
C4' |
H12 |
239.9 |
120.0 |
| C1' |
O4' |
C4' |
C5' |
110.6 |
159.3 |
| O4' |
C4' |
C5' |
H10 |
120.7 |
122.4 |
| H11 |
C5' |
C4' |
H12 |
119.7 |
240.0 |
| C3' |
C4' |
O4' |
C5' |
233.0 |
241.2 |
| O4' |
C4' |
C3' |
H8 |
152.1 |
94.7 |
| C3' |
C4' |
O4' |
H10 |
114.4 |
118.8 |
| C5' |
C4' |
O4' |
H10 |
241.4 |
237.7 |
| O4' |
C4' |
C5' |
H11 |
152.5 |
189.7 |
| O4' |
C4' |
C5' |
H12 |
32.8 |
309.6 |
| C4' |
O4' |
C1' |
H5 |
112.3 |
78.4 |
| C1' |
N1 |
C2 |
N3 |
182.8 |
180.0 |
| C1' |
N1 |
C6 |
H1 |
298.8 |
58.0 |
| C1' |
N1 |
C6 |
H2 |
55.0 |
302.0 |
| C3' |
C4' |
O4' |
C1' |
343.7 |
40.5 |
| C2' |
C1' |
O4' |
H5 |
247.4 |
241.1 |
| C5' |
C4' |
O4' |
C1' |
110.6 |
159.3 |
| C1' |
O4' |
C4' |
H10 |
229.3 |
281.7 |
| O3G |
PG |
O3B |
O1G |
247.0 |
240.0 |
| O3B |
PG |
O1G |
H16 |
121.6 |
180.0 |
| O3B |
PG |
O3G |
H15 |
234.8 |
60.0 |
| N1 |
C2 |
O2 |
N3 |
178.9 |
179.8 |
| O2 |
C2 |
N3 |
C4 |
180.5 |
179.7 |
| O2 |
C2 |
N3 |
H17 |
0.5 |
359.8 |
| O2 |
C2 |
N1 |
N3 |
181.1 |
180.3 |
| N1 |
C2 |
N3 |
C4 |
1.7 |
360.0 |
| N1 |
C2 |
N3 |
H17 |
181.7 |
180.0 |
| C6 |
N1 |
C2 |
N3 |
356.9 |
360.0 |
| N03 |
C6 |
N1 |
H1 |
238.1 |
122.0 |
| N03 |
C6 |
N1 |
H2 |
121.9 |
238.0 |
| H1 |
C6 |
N1 |
H2 |
243.8 |
116.0 |
| N1 |
C6 |
N03 |
H1 |
121.9 |
238.0 |
| N1 |
C6 |
N03 |
H2 |
238.1 |
122.0 |
| H1 |
C6 |
N03 |
H2 |
116.2 |
244.0 |
| C2 |
N3 |
C4 |
H17 |
180.0 |
180.0 |
| N3 |
C4 |
N4 |
H3 |
180.2 |
180.0 |
| N3 |
C4 |
N4 |
H4 |
0.2 |
0.0 |
| C2 |
N3 |
C4 |
N03 |
0.3 |
0.0 |
| N03 |
C4 |
N4 |
H3 |
360.0 |
360.0 |
| N03 |
C4 |
N4 |
H4 |
180.0 |
180.0 |
| C2 |
N3 |
C4 |
N4 |
180.0 |
180.0 |
| H3 |
N4 |
C4 |
H4 |
180.0 |
180.0 |
| O2G |
PG |
O1G |
H16 |
360.0 |
60.0 |
| O2G |
PG |
O3G |
H15 |
0.0 |
180.0 |
| O3B |
PG |
O1G |
O3G |
235.6 |
240.0 |
| O1G |
PG |
O3G |
H15 |
117.9 |
300.0 |
| O3B |
PG |
O3G |
O1G |
116.9 |
120.0 |
| O3G |
PG |
O1G |
H16 |
246.0 |
300.0 |
| N1 |
C6 |
H1 |
H2 |
113.7 |
243.9 |
| N03 |
C6 |
H1 |
H2 |
246.3 |
116.2 |
| N1 |
C6 |
H2 |
H1 |
246.3 |
116.1 |
| N03 |
C6 |
H2 |
H1 |
113.8 |
243.9 |
| C4 |
N4 |
H3 |
H4 |
180.0 |
180.0 |
| C4 |
N4 |
H4 |
H3 |
180.0 |
180.0 |
| C2' |
C1' |
H5 |
O4' |
109.3 |
115.4 |
| H5 |
C1' |
O4' |
C4' |
112.3 |
78.4 |
| C3' |
C2' |
H6 |
H7 |
121.0 |
237.2 |
| H6 |
C2' |
C1' |
O4' |
262.0 |
142.6 |
| H6 |
C2' |
C1' |
H5 |
148.9 |
23.8 |
| C3' |
C2' |
H7 |
H6 |
239.0 |
122.7 |
| H7 |
C2' |
C1' |
O4' |
141.3 |
265.2 |
| H7 |
C2' |
C1' |
H5 |
28.2 |
146.3 |
| O3' |
C3' |
H8 |
C4' |
248.0 |
237.3 |
| H8 |
C3' |
C2' |
H6 |
332.2 |
122.7 |
| H8 |
C3' |
C2' |
H7 |
92.9 |
0.0 |
| H8 |
C3' |
C4' |
C5' |
27.1 |
335.8 |
| H8 |
C3' |
C4' |
O4' |
152.1 |
94.7 |
| H8 |
C3' |
C4' |
H10 |
269.5 |
213.6 |
| H9 |
O3' |
C3' |
C4' |
294.0 |
176.1 |
| H9 |
O3' |
C3' |
H8 |
49.1 |
298.9 |
| C3' |
C4' |
H10 |
C5' |
123.3 |
122.2 |
| C3' |
C4' |
H10 |
O4' |
245.2 |
244.6 |
| H10 |
C4' |
C3' |
H8 |
269.5 |
213.6 |
| C5' |
C4' |
H10 |
O4' |
121.9 |
122.4 |
| H10 |
C4' |
C5' |
H11 |
31.8 |
67.2 |
| H10 |
C4' |
C5' |
H12 |
272.0 |
187.2 |
| O5' |
C5' |
H11 |
H12 |
119.7 |
240.0 |
| H11 |
C5' |
C4' |
O4' |
152.5 |
189.7 |
| H11 |
C5' |
C4' |
H10 |
31.8 |
67.2 |
| C4' |
C5' |
H11 |
H12 |
240.4 |
120.0 |
| O5' |
C5' |
H12 |
H11 |
240.3 |
120.0 |
| H12 |
C5' |
C4' |
O4' |
32.8 |
309.6 |
| H12 |
C5' |
C4' |
H10 |
272.0 |
187.2 |
| C4' |
C5' |
H12 |
H11 |
119.6 |
240.0 |
| H14 |
O1B |
PB |
O3B |
137.8 |
300.0 |
| H15 |
O3G |
PG |
O1G |
117.9 |
300.0 |
| C2 |
N3 |
H17 |
C4 |
180.0 |
180.0 |