Atom Nomenclature for F62

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for F62

Atom Name (V3) Atom Name (V2)
C4 C1
C5 C2
C6 C3
N1 N1
N3 N2
CAR C4
CAS C5
CBE C6
OAF O1
NBA N3
CBG C7
CAO C8
CAJ C9
CAI C10
CAK C11
CBJ C12
NBS N4
CBM C13
OAG O2
CAQ C14
CBF C15
CAB C16
C2 C17
NBB N5
CBK C18
CBL C19
CAP C20
OBC O3
CAA C21
CAM C22
CAL C23
CBI C24
NBR N6
CAV C25
CAT C26
NBQ N7
CAC C27
CAU C28
CAW C29
H1 H1
H2 H2
H3 H3
H5 H5
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H28 H28
H29 H29
H30 H30
H31 H31
H32 H32
H33 H33
H34 H34