Atom Nomenclature for F4N

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for F4N

Atom Name (V3) Atom Name (V2)
O11 O1
C7 C1
C1 C2
C2 C3
C3 C4
C4 C5
C5 C6
C6 C7
N8 N1
O22 O2
O21 O3
S9 S1
O10 O4
N12 N2
C13 C8
N14 N3
C15 C9
C17 C10
C16 C11
N20 N4
C19 C12
N18 N5
C23 C13
C24 C14
BR2 BR1
C25 C15
C26 C16
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14