Atom Nomenclature for F4C

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for F4C

Atom Name (V3) Atom Name (V2)
N1 N1
N3 N3
C4 C4
C5 C5
C6 C6
C7 C7
C8 C8
C10 C10
C13 C13
C15 C15
C17 C17
C20 C20
C21 C21
C22 C22
C24 C24
F4 F4
C14 C14
C16 C16
C12 C12
C2 C2
O1 O1
N2 N2
C18 C18
C19 C19
N4 N4
C3 C3
C1 C1
O2 O2
C11 C11
C9 C9
C23 C23
F1 F1
F2 F2
F3 F3
HN3 HN3
H13 H13
H15 H15
H17 H17
H20 H20
H21 H21
H22 H22
H24 H24
H16 H16
H12 H12
H18 H18
H19 H19
H3 H3
H11 H11
H11A H11A
H23 H23