Atom Nomenclature for F43

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for F43

Atom Name (V3) Atom Name (V2)
NI NI
NA NA
CHA CHA
C1A C1A
C2A C2A
C3A C3A
C4A C4A
C5A C5A
C6A C6A
O7A O7A
N8A N8A
C9A C9A
CAA CAA
CBA CBA
CCA CCA
ODA ODA
OEA OEA
NB NB
CHB CHB
C1B C1B
C2B C2B
C3B C3B
C4B C4B
N5B N5B
C6B C6B
O7B O7B
C8B C8B
C9B C9B
CAB CAB
CBB CBB
CCB CCB
ODB ODB
OEB OEB
NC NC
CHC CHC
C1C C1C
C2C C2C
C3C C3C
C4C C4C
C5C C5C
C6C C6C
O7C O7C
O8C O8C
C8C C8C
C9C C9C
CAC CAC
OBC OBC
OCC OCC
ND ND
CHD CHD
C5D C5D
C6D C6D
C7D C7D
O8D O8D
C9D C9D
CAD CAD
OBD OBD
OCD OCD
C1D C1D
C2D C2D
C3D C3D
C4D C4D
H4A H4A
HHA1 HHA1
HHA2 HHA2
H4D H4D
H3A H3A
H5A1 H5A1
H5A2 H5A2
H9A1 H9A1
H9A2 H9A2
H9A3 H9A3
HAA1 HAA1
HAA2 HAA2
HHB1 HHB1
HHB2 HHB2
H8A1 H8A1
H8A2 H8A2
HBA1 HBA1
HBA2 HBA2
HDA HDA
H5B H5B
H3B H3B
H8B1 H8B1
H8B2 H8B2
H9B1 H9B1
H9B2 H9B2
H9B3 H9B3
HAB1 HAB1
HAB2 HAB2
HHC HHC
HBB1 HBB1
HBB2 HBB2
HEB HEB
H2C H2C
H3C H3C
H5C1 H5C1
H5C2 H5C2
H8C1 H8C1
H8C2 H8C2
H8C H8C
H9C1 H9C1
H9C2 H9C2
HBC HBC
H5D1 H5D1
H5D2 H5D2
H6D1 H6D1
H6D2 H6D2
H2D H2D
H9D1 H9D1
H9D2 H9D2
H3D H3D
HCD HCD