PDB Chemical Component F40
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for F40
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
O |
C |
1.246 |
1.217 |
C |
N |
1.335 |
1.353 |
C |
C3 |
1.482 |
1.470 |
N |
C1 |
1.351 |
1.368 |
C1 |
C8 |
1.485 |
1.478 |
C1 |
N1 |
1.357 |
1.309 |
C8 |
C9 |
1.395 |
1.395 |
C8 |
C13 |
1.393 |
1.396 |
C9 |
C10 |
1.388 |
1.380 |
C10 |
C11 |
1.384 |
1.383 |
C11 |
C12 |
1.388 |
1.384 |
C12 |
C13 |
1.399 |
1.379 |
N1 |
C2 |
1.342 |
1.348 |
C2 |
C3 |
1.476 |
1.415 |
C2 |
C7 |
1.382 |
1.397 |
C3 |
C4 |
1.385 |
1.393 |
C7 |
C6 |
1.385 |
1.376 |
C6 |
C5 |
1.396 |
1.388 |
C5 |
C4 |
1.397 |
1.378 |
N |
H |
1.000 |
0.971 |
C9 |
H9 |
1.080 |
1.080 |
C13 |
H13 |
1.080 |
1.080 |
C10 |
H10 |
1.080 |
1.080 |
C11 |
H11 |
1.080 |
1.080 |
C12 |
H12 |
1.080 |
1.080 |
C7 |
H7 |
1.080 |
1.081 |
C4 |
H4 |
1.080 |
1.080 |
C6 |
H6 |
1.080 |
1.081 |
C5 |
H5 |
1.080 |
1.080 |
Bond Angles for F40
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O |
C |
N |
119.8 |
121.3 |
O |
C |
C3 |
122.1 |
121.2 |
N |
C |
C3 |
118.2 |
117.5 |
C |
N |
C1 |
122.4 |
120.5 |
C |
N |
H |
118.8 |
119.7 |
C |
C3 |
C2 |
116.8 |
118.1 |
C |
C3 |
C4 |
124.2 |
121.8 |
N |
C1 |
C8 |
120.8 |
118.5 |
N |
C1 |
N1 |
122.5 |
123.0 |
C1 |
N |
H |
118.8 |
119.8 |
C8 |
C1 |
N1 |
116.5 |
118.5 |
C1 |
C8 |
C9 |
120.9 |
120.1 |
C1 |
C8 |
C13 |
120.0 |
120.2 |
C1 |
N1 |
C2 |
121.2 |
121.7 |
C9 |
C8 |
C13 |
118.9 |
119.7 |
C8 |
C9 |
C10 |
120.3 |
119.9 |
C8 |
C9 |
H9 |
119.9 |
120.1 |
C8 |
C13 |
C12 |
120.4 |
119.9 |
C8 |
C13 |
H13 |
119.8 |
120.0 |
C9 |
C10 |
C11 |
120.9 |
120.1 |
C10 |
C9 |
H9 |
119.8 |
120.0 |
C9 |
C10 |
H10 |
119.6 |
120.0 |
C10 |
C11 |
C12 |
119.3 |
120.3 |
C11 |
C10 |
H10 |
119.5 |
119.9 |
C10 |
C11 |
H11 |
120.4 |
119.8 |
C11 |
C12 |
C13 |
120.2 |
120.1 |
C12 |
C11 |
H11 |
120.3 |
119.8 |
C11 |
C12 |
H12 |
119.9 |
119.9 |
C12 |
C13 |
H13 |
119.8 |
120.1 |
C13 |
C12 |
H12 |
119.9 |
119.9 |
N1 |
C2 |
C3 |
118.9 |
119.2 |
N1 |
C2 |
C7 |
121.5 |
121.5 |
C3 |
C2 |
C7 |
119.6 |
119.3 |
C2 |
C3 |
C4 |
119.1 |
120.0 |
C2 |
C7 |
C6 |
119.9 |
119.7 |
C2 |
C7 |
H7 |
120.0 |
120.1 |
C3 |
C4 |
C5 |
119.3 |
119.6 |
C3 |
C4 |
H4 |
120.3 |
120.2 |
C7 |
C6 |
C5 |
120.7 |
120.8 |
C6 |
C7 |
H7 |
120.1 |
120.2 |
C7 |
C6 |
H6 |
119.6 |
119.6 |
C6 |
C5 |
C4 |
121.4 |
120.6 |
C5 |
C6 |
H6 |
119.6 |
119.6 |
C6 |
C5 |
H5 |
119.3 |
119.7 |
C5 |
C4 |
H4 |
120.4 |
120.2 |
C4 |
C5 |
H5 |
119.3 |
119.7 |
Torsion Angles for F40
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
N |
C |
O |
C3 |
180.9 |
180.3 |
O |
C |
N |
C1 |
177.9 |
180.0 |
O |
C |
N |
H |
357.8 |
360.0 |
O |
C |
C3 |
C2 |
181.6 |
179.7 |
O |
C |
C3 |
C4 |
1.0 |
0.0 |
O |
C |
N |
C3 |
179.1 |
179.7 |
N |
C |
C3 |
C2 |
0.7 |
359.4 |
N |
C |
C3 |
C4 |
180.1 |
179.7 |
C |
N |
C1 |
C8 |
177.1 |
180.0 |
C |
N |
C1 |
N1 |
2.0 |
360.0 |
C1 |
N |
C |
H |
180.0 |
180.0 |
O |
C |
C3 |
N |
180.9 |
180.3 |
C3 |
C |
N |
C1 |
358.8 |
0.3 |
C3 |
C |
N |
H |
178.7 |
180.3 |
N1 |
C2 |
C3 |
C |
359.1 |
0.6 |
C |
C3 |
C2 |
C7 |
180.0 |
180.3 |
C2 |
C3 |
C |
C4 |
180.6 |
179.7 |
C |
C3 |
C4 |
C5 |
179.8 |
179.2 |
C |
C3 |
C4 |
H4 |
359.8 |
360.0 |
C1 |
N |
C |
C3 |
358.8 |
0.3 |
C |
N |
C1 |
H |
180.0 |
180.0 |
C8 |
C1 |
N |
N1 |
175.1 |
180.1 |
N |
C1 |
C8 |
C9 |
343.9 |
180.0 |
N |
C1 |
C8 |
C13 |
169.1 |
359.6 |
N |
C1 |
N1 |
C2 |
357.8 |
0.0 |
N |
C1 |
C8 |
N1 |
184.6 |
179.9 |
C8 |
C1 |
N |
H |
357.2 |
0.1 |
C8 |
C1 |
N1 |
C2 |
182.5 |
180.0 |
C9 |
C8 |
C1 |
C13 |
174.8 |
180.4 |
C1 |
C8 |
C9 |
C10 |
182.1 |
179.9 |
C1 |
C8 |
C9 |
H9 |
2.1 |
359.9 |
C1 |
C8 |
C13 |
C12 |
177.3 |
179.8 |
C1 |
C8 |
C13 |
H13 |
357.2 |
0.1 |
N |
C1 |
N1 |
C8 |
175.3 |
180.1 |
N1 |
C1 |
N |
H |
182.1 |
180.0 |
N1 |
C1 |
C8 |
C9 |
159.3 |
0.1 |
N1 |
C1 |
C8 |
C13 |
344.4 |
179.7 |
C1 |
N1 |
C2 |
C3 |
1.6 |
359.7 |
C1 |
N1 |
C2 |
C7 |
180.7 |
180.0 |
C9 |
C8 |
C1 |
N1 |
159.3 |
0.1 |
C1 |
C8 |
C9 |
C13 |
185.1 |
179.6 |
C9 |
C8 |
C13 |
C12 |
2.3 |
359.4 |
C9 |
C8 |
C13 |
H13 |
182.3 |
179.8 |
C8 |
C9 |
C10 |
C11 |
2.3 |
0.0 |
C10 |
C9 |
C8 |
H9 |
180.0 |
180.0 |
C8 |
C9 |
C10 |
H10 |
182.3 |
179.9 |
C13 |
C8 |
C1 |
N1 |
344.4 |
179.7 |
C1 |
C8 |
C13 |
C9 |
174.9 |
180.4 |
C13 |
C8 |
C9 |
C10 |
357.0 |
0.3 |
C13 |
C8 |
C9 |
H9 |
177.0 |
180.3 |
C11 |
C12 |
C13 |
C8 |
359.0 |
0.5 |
C12 |
C13 |
C8 |
H13 |
180.0 |
179.7 |
C8 |
C13 |
C12 |
H12 |
179.1 |
180.3 |
C10 |
C9 |
C8 |
C13 |
357.0 |
0.3 |
C8 |
C9 |
C10 |
H9 |
180.0 |
180.0 |
C9 |
C10 |
C11 |
C12 |
359.1 |
359.9 |
C11 |
C10 |
C9 |
H10 |
180.0 |
180.1 |
C9 |
C10 |
C11 |
H11 |
179.2 |
180.0 |
C11 |
C10 |
C9 |
H9 |
182.3 |
180.0 |
C9 |
C10 |
C11 |
H10 |
180.0 |
179.9 |
C10 |
C11 |
C12 |
C13 |
0.2 |
359.8 |
C12 |
C11 |
C10 |
H11 |
180.0 |
179.9 |
C10 |
C11 |
C12 |
H12 |
180.2 |
180.0 |
C8 |
C13 |
C12 |
C11 |
359.0 |
0.5 |
C12 |
C11 |
C10 |
H10 |
179.1 |
180.0 |
C10 |
C11 |
C12 |
H11 |
180.0 |
180.1 |
C11 |
C12 |
C13 |
H13 |
179.1 |
180.2 |
C13 |
C12 |
C11 |
H12 |
180.0 |
179.8 |
C8 |
C13 |
C12 |
H13 |
180.0 |
180.3 |
C13 |
C12 |
C11 |
H11 |
180.2 |
179.7 |
C11 |
C12 |
C13 |
H12 |
180.0 |
180.2 |
C |
C3 |
C2 |
N1 |
359.1 |
0.6 |
C3 |
C2 |
N1 |
C7 |
180.9 |
179.7 |
N1 |
C2 |
C3 |
C4 |
179.7 |
180.3 |
N1 |
C2 |
C7 |
C6 |
180.5 |
180.0 |
N1 |
C2 |
C7 |
H7 |
0.5 |
360.0 |
C |
C3 |
C2 |
C4 |
179.5 |
180.3 |
N1 |
C2 |
C3 |
C7 |
179.1 |
180.3 |
C3 |
C2 |
C7 |
C6 |
359.6 |
0.3 |
C3 |
C2 |
C7 |
H7 |
179.6 |
180.3 |
C2 |
C3 |
C4 |
C5 |
359.2 |
359.5 |
C2 |
C3 |
C4 |
H4 |
179.2 |
180.3 |
N1 |
C2 |
C7 |
C3 |
180.9 |
179.7 |
C7 |
C2 |
C3 |
C4 |
0.6 |
360.0 |
C2 |
C7 |
C6 |
C5 |
0.4 |
0.0 |
C6 |
C7 |
C2 |
H7 |
180.0 |
180.0 |
C2 |
C7 |
C6 |
H6 |
180.4 |
179.9 |
C |
C3 |
C4 |
C2 |
180.6 |
179.7 |
C4 |
C3 |
C2 |
C7 |
0.6 |
360.0 |
C6 |
C5 |
C4 |
C3 |
0.9 |
0.9 |
C5 |
C4 |
C3 |
H4 |
180.0 |
179.2 |
C3 |
C4 |
C5 |
H5 |
180.9 |
180.3 |
C2 |
C7 |
C6 |
H7 |
180.0 |
180.0 |
C7 |
C6 |
C5 |
C4 |
359.3 |
359.4 |
C5 |
C6 |
C7 |
H6 |
180.0 |
180.1 |
C7 |
C6 |
C5 |
H5 |
179.3 |
179.9 |
C3 |
C4 |
C5 |
C6 |
0.9 |
0.9 |
C5 |
C6 |
C7 |
H7 |
180.4 |
180.0 |
C7 |
C6 |
C5 |
H6 |
180.0 |
179.9 |
C6 |
C5 |
C4 |
H4 |
180.9 |
180.1 |
C4 |
C5 |
C6 |
H5 |
180.0 |
179.4 |
C3 |
C4 |
C5 |
H4 |
180.0 |
180.8 |
C4 |
C5 |
C6 |
H6 |
179.3 |
179.5 |
C6 |
C5 |
C4 |
H5 |
180.0 |
180.6 |
H |
N |
C |
C3 |
178.7 |
180.3 |
C |
N |
H |
C1 |
180.0 |
180.0 |
H |
N |
C1 |
C8 |
357.2 |
0.1 |
H |
N |
C1 |
N1 |
182.1 |
180.0 |
H9 |
C9 |
C8 |
C13 |
177.0 |
180.3 |
C8 |
C9 |
H9 |
C10 |
180.0 |
180.0 |
H9 |
C9 |
C10 |
C11 |
182.3 |
180.0 |
H9 |
C9 |
C10 |
H10 |
2.3 |
359.9 |
C8 |
C13 |
H13 |
C12 |
180.0 |
179.7 |
H13 |
C13 |
C12 |
H12 |
359.1 |
0.0 |
C9 |
C10 |
H10 |
C11 |
180.0 |
180.1 |
H10 |
C10 |
C9 |
H9 |
2.3 |
359.9 |
H10 |
C10 |
C11 |
C12 |
179.1 |
180.0 |
H10 |
C10 |
C11 |
H11 |
359.2 |
0.1 |
C10 |
C11 |
H11 |
C12 |
180.0 |
179.9 |
H11 |
C11 |
C10 |
H10 |
359.2 |
0.1 |
H11 |
C11 |
C12 |
C13 |
180.2 |
179.7 |
H11 |
C11 |
C12 |
H12 |
0.1 |
359.9 |
C11 |
C12 |
H12 |
C13 |
180.0 |
179.8 |
H12 |
C12 |
C11 |
H11 |
0.1 |
359.9 |
H12 |
C12 |
C13 |
H13 |
359.1 |
0.0 |
C2 |
C7 |
H7 |
C6 |
180.0 |
180.0 |
H7 |
C7 |
C6 |
C5 |
180.4 |
180.0 |
H7 |
C7 |
C6 |
H6 |
0.4 |
359.9 |
C3 |
C4 |
H4 |
C5 |
180.0 |
179.2 |
H4 |
C4 |
C5 |
H5 |
0.9 |
359.5 |
C7 |
C6 |
H6 |
C5 |
180.0 |
180.1 |
H6 |
C6 |
C7 |
H7 |
0.4 |
359.9 |
H6 |
C6 |
C5 |
C4 |
179.3 |
179.5 |
H6 |
C6 |
C5 |
H5 |
359.3 |
0.0 |
C6 |
C5 |
H5 |
C4 |
180.0 |
179.4 |
H5 |
C5 |
C6 |
H6 |
359.3 |
0.0 |
H5 |
C5 |
C4 |
H4 |
0.9 |
359.5 |