PDB Chemical Component F3H

Ideal Model

Chemical Description

Name 1,5-anhydro-2,3-dideoxy-3-fluoro-2-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-6-O-phosphono-D-altritol
Synonyms 1,5-anhydro-2,3-dideoxy-3-fluoro-2-(thymin-1-yl)-D-altritol-5-dihydrogenphosphate
Formula C11 H16 F N2 O8 P
Formal charge 0
Molecular weight 354.226 g/mol
Component type DNA linking
Nonstandard Parent Id DT

Chemical features

Atom count 39
Chiral atom count 4
Chiral atoms C1' C2' C3' C4'
Bond count 40
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 1,5-anhydro-2,3-dideoxy-3-fluoro-2-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-6-O-phosphono-D-altritol
Systematic name (OpenEye OEToolkits) [(2R,3R,4S,5R)-4-fluoro-3-hydroxy-5-(5-methyl-2,4-dioxo-pyrimidin-1-yl)oxan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) CC1=CN([C@@H]2CO[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2F)C(=O)NC1=O
SMILES (CACTVS) CC1=CN([CH]2CO[CH](CO[P](O)(O)=O)[CH](O)[CH]2F)C(=O)NC1=O
Stereo SMILES (OpenEye) CC1=CN(C(=O)NC1=O)[C@@H]2CO[C@@H]([C@H]([C@H]2F)O)COP(=O)(O)O
InChI descriptor InChI=1S/C11H16FN2O8P/c1-5-2-14(11(17)13-10(5)16)6-3-21-7(9(15)8(6)12)4-22-23(18,19)20/h2,6-9,15H,3-4H2,1H3,(H,13,16,17)(H2,18,19,20)/t6-,7-,8+,9-/m1/s1
InChIKey descriptor RHZOVKWYBYFNDA-LURQLKTLSA-N

Status Information

Last modified 2020-06-17
Created 2011-01-04
Release status REL
Model PDB code 3Q61
Processing site RCSB