PDB Chemical Component F3H
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for F3H
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| OP3 |
P |
1.566 |
1.480 |
| OP1 |
P |
1.611 |
1.609 |
| P |
O5' |
1.568 |
1.610 |
| P |
OP2 |
1.593 |
1.610 |
| C1' |
N1 |
1.465 |
1.465 |
| N1 |
C6 |
1.360 |
1.368 |
| N1 |
C2 |
1.390 |
1.346 |
| C2 |
O2 |
1.315 |
1.215 |
| C2 |
N3 |
1.345 |
1.346 |
| N3 |
C4 |
1.361 |
1.348 |
| N3 |
HN3 |
1.000 |
0.970 |
| C5 |
C4 |
1.410 |
1.416 |
| C4 |
O4 |
1.304 |
1.217 |
| C6 |
C5 |
1.385 |
1.351 |
| C5 |
C5M |
1.505 |
1.506 |
| C6 |
H6 |
1.080 |
1.080 |
| C6' |
C1' |
1.513 |
1.531 |
| C1' |
C2' |
1.519 |
1.532 |
| C1' |
H1' |
1.100 |
1.090 |
| F2' |
C2' |
1.363 |
1.399 |
| C3' |
C2' |
1.532 |
1.532 |
| C2' |
H2' |
1.101 |
1.090 |
| C4' |
C3' |
1.540 |
1.532 |
| C3' |
O3' |
1.439 |
1.429 |
| C3' |
H3' |
1.099 |
1.091 |
| O3' |
HO3' |
0.950 |
0.967 |
| C5' |
C4' |
1.514 |
1.530 |
| C4' |
O4' |
1.434 |
1.429 |
| C4' |
H4' |
1.100 |
1.090 |
| O4' |
C6' |
1.408 |
1.429 |
| C5' |
O5' |
1.405 |
1.429 |
| C5' |
H5' |
1.100 |
1.090 |
| C5' |
H5'A |
1.100 |
1.090 |
| C5M |
H5M |
1.100 |
1.090 |
| C5M |
H5MA |
1.100 |
1.091 |
| C5M |
H5MB |
1.100 |
1.090 |
| C6' |
H6' |
1.100 |
1.090 |
| C6' |
H6'A |
1.100 |
1.090 |
| OP1 |
HOP1 |
0.950 |
0.967 |
| OP2 |
HOP2 |
0.950 |
0.967 |
Bond Angles for F3H
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OP1 |
P |
OP2 |
115.3 |
109.5 |
| O5' |
P |
OP2 |
108.6 |
109.4 |
| P |
O5' |
C5' |
118.6 |
123.1 |
| P |
OP2 |
HOP2 |
109.5 |
114.0 |
| C2 |
N1 |
C6 |
121.1 |
120.6 |
| N1 |
C6 |
C5 |
120.6 |
119.7 |
| N1 |
C6 |
H6 |
119.7 |
120.2 |
| N1 |
C2 |
O2 |
122.8 |
119.6 |
| N1 |
C2 |
N3 |
119.2 |
120.9 |
| O2 |
C2 |
N3 |
118.0 |
119.5 |
| C2 |
N3 |
C4 |
120.6 |
120.3 |
| C2 |
N3 |
HN3 |
119.7 |
119.8 |
| C4 |
N3 |
HN3 |
119.7 |
119.9 |
| N3 |
C4 |
O4 |
116.9 |
120.3 |
| C6 |
C5 |
C5M |
122.5 |
120.4 |
| C5 |
C5M |
H5M |
109.5 |
109.5 |
| C5 |
C5M |
H5MA |
109.5 |
109.5 |
| C5 |
C5M |
H5MB |
109.5 |
109.5 |
| C6' |
C1' |
H1' |
105.6 |
109.5 |
| C2' |
C1' |
H1' |
110.1 |
109.6 |
| C1' |
C2' |
H2' |
110.1 |
109.5 |
| F2' |
C2' |
H2' |
113.3 |
109.6 |
| C3' |
C2' |
H2' |
108.1 |
109.6 |
| C4' |
C3' |
H3' |
108.9 |
109.6 |
| O3' |
C3' |
H3' |
110.4 |
109.5 |
| C3' |
O3' |
HO3' |
109.5 |
114.0 |
| C5' |
C4' |
H4' |
109.4 |
109.5 |
| O4' |
C4' |
H4' |
111.8 |
109.5 |
| C4' |
O4' |
C6' |
114.9 |
114.1 |
| O4' |
C6' |
H6' |
109.9 |
109.4 |
| O4' |
C6' |
H6'A |
109.9 |
109.5 |
| O5' |
C5' |
H5' |
110.0 |
109.5 |
| O5' |
C5' |
H5'A |
110.0 |
109.5 |
| H5' |
C5' |
H5'A |
108.9 |
109.5 |
| H5M |
C5M |
H5MA |
109.4 |
109.4 |
| H5M |
C5M |
H5MB |
109.5 |
109.5 |
| H5MA |
C5M |
H5MB |
109.5 |
109.4 |
| H6' |
C6' |
H6'A |
109.0 |
109.5 |
Torsion Angles for F3H
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OP3 |
P |
OP2 |
HOP2 |
0.0 |
180.0 |
| O5' |
P |
OP1 |
OP2 |
121.6 |
120.0 |
| OP1 |
P |
OP2 |
HOP2 |
239.6 |
59.9 |
| OP1 |
P |
O5' |
OP2 |
234.3 |
240.0 |
| O5' |
P |
OP2 |
HOP2 |
118.4 |
299.9 |
| P |
O5' |
C5' |
H5' |
40.0 |
60.1 |
| P |
O5' |
C5' |
H5'A |
280.0 |
300.0 |
| OP2 |
P |
O5' |
C5' |
171.0 |
295.0 |
| C1' |
N1 |
C6 |
H6 |
355.3 |
0.3 |
| C6 |
N1 |
C2 |
O2 |
177.8 |
180.0 |
| C6 |
N1 |
C2 |
N3 |
358.6 |
0.0 |
| N1 |
C6 |
C5 |
C5M |
182.6 |
180.0 |
| C2 |
N1 |
C6 |
C5 |
359.5 |
360.0 |
| C2 |
N1 |
C6 |
H6 |
179.5 |
180.0 |
| O2 |
C2 |
N1 |
N3 |
179.2 |
179.9 |
| N1 |
C2 |
N3 |
C4 |
0.9 |
359.9 |
| N1 |
C2 |
N3 |
HN3 |
180.9 |
180.0 |
| O2 |
C2 |
N1 |
C6 |
177.8 |
180.0 |
| N1 |
C2 |
O2 |
N3 |
180.8 |
180.1 |
| O2 |
C2 |
N3 |
C4 |
181.7 |
180.0 |
| O2 |
C2 |
N3 |
HN3 |
1.7 |
0.1 |
| N3 |
C2 |
N1 |
C6 |
358.6 |
0.0 |
| N1 |
C2 |
N3 |
O2 |
179.2 |
179.9 |
| C4 |
N3 |
C2 |
HN3 |
180.0 |
179.9 |
| C2 |
N3 |
C4 |
O4 |
179.2 |
180.1 |
| C2 |
N3 |
C4 |
HN3 |
180.0 |
180.1 |
| C2 |
N3 |
HN3 |
C4 |
180.0 |
179.9 |
| HN3 |
N3 |
C4 |
O4 |
359.2 |
0.0 |
| N1 |
C6 |
C5 |
C4 |
2.7 |
0.1 |
| C5 |
C4 |
N3 |
HN3 |
181.3 |
180.0 |
| O4 |
C4 |
N3 |
HN3 |
359.2 |
0.0 |
| N1 |
C6 |
C5 |
H6 |
180.0 |
180.0 |
| C6 |
C5 |
C5M |
H5M |
0.0 |
180.0 |
| C6 |
C5 |
C5M |
H5MA |
120.0 |
300.1 |
| C6 |
C5 |
C5M |
H5MB |
240.0 |
60.0 |
| H5M |
C5M |
C5 |
H5MA |
240.0 |
240.0 |
| H5M |
C5M |
C5 |
H5MB |
120.0 |
120.0 |
| H5MA |
C5M |
C5 |
H5MB |
240.0 |
240.0 |
| N1 |
C6 |
H6 |
C5 |
180.0 |
180.0 |
| H6 |
C6 |
C5 |
C5M |
2.6 |
360.0 |
| C2' |
C1' |
C6' |
H1' |
241.2 |
240.0 |
| C6' |
C1' |
C2' |
H2' |
187.3 |
183.1 |
| C6' |
C1' |
C2' |
H1' |
116.0 |
120.0 |
| F2' |
C2' |
C1' |
H2' |
237.1 |
239.8 |
| C3' |
C2' |
C1' |
H2' |
119.9 |
119.9 |
| H1' |
C1' |
C2' |
H2' |
71.3 |
63.2 |
| F2' |
C2' |
C1' |
H1' |
308.4 |
303.0 |
| C1' |
C2' |
F2' |
H2' |
120.8 |
120.1 |
| C3' |
C2' |
F2' |
H2' |
240.2 |
239.7 |
| C3' |
C2' |
C1' |
H1' |
191.2 |
183.1 |
| C1' |
C2' |
C3' |
H2' |
238.9 |
240.2 |
| F2' |
C2' |
C3' |
H2' |
123.0 |
120.3 |
| H2' |
C2' |
C1' |
H1' |
71.3 |
63.2 |
| C4' |
C3' |
C2' |
H2' |
173.3 |
176.8 |
| O3' |
C3' |
C4' |
H3' |
120.8 |
120.2 |
| C4' |
C3' |
O3' |
HO3' |
299.7 |
179.7 |
| O3' |
C3' |
C2' |
H2' |
292.8 |
296.7 |
| C4' |
C3' |
O3' |
H3' |
240.2 |
239.8 |
| H3' |
C3' |
C2' |
H2' |
53.5 |
56.9 |
| H3' |
C3' |
O3' |
HO3' |
59.5 |
299.9 |
| HO3' |
O3' |
C3' |
H3' |
59.5 |
299.9 |
| P |
O5' |
C5' |
C4' |
160.0 |
180.0 |
| C5' |
C4' |
C3' |
H3' |
308.3 |
302.3 |
| O4' |
C4' |
C5' |
H4' |
122.1 |
120.1 |
| C5' |
C4' |
O4' |
C6' |
182.8 |
181.1 |
| O4' |
C4' |
C3' |
H3' |
65.6 |
62.3 |
| C5' |
C4' |
O4' |
H4' |
239.4 |
239.9 |
| C4' |
O4' |
C6' |
H6' |
174.3 |
178.8 |
| C4' |
O4' |
C6' |
H6'A |
54.4 |
58.9 |
| H4' |
C4' |
C3' |
H3' |
187.6 |
182.3 |
| H4' |
C4' |
O4' |
C6' |
303.4 |
301.2 |
| O4' |
C6' |
C1' |
H1' |
175.5 |
177.6 |
| C6' |
O4' |
C4' |
H4' |
303.4 |
301.2 |
| H6' |
C6' |
O4' |
H6'A |
120.0 |
120.0 |
| C5' |
O5' |
P |
OP2 |
171.0 |
295.0 |
| O5' |
C5' |
C4' |
H4' |
177.1 |
305.0 |
| H5' |
C5' |
O5' |
H5'A |
120.0 |
120.0 |
| H5' |
C5' |
C4' |
H4' |
297.1 |
65.0 |
| O5' |
C5' |
H5' |
H5'A |
239.4 |
240.0 |
| H5'A |
C5' |
C4' |
H4' |
57.1 |
185.0 |
| O5' |
C5' |
H5'A |
H5' |
120.6 |
120.0 |
| C5 |
C5M |
H5M |
H5MA |
120.0 |
120.1 |
| C5 |
C5M |
H5M |
H5MB |
240.0 |
240.0 |
| H5MA |
C5M |
H5M |
H5MB |
120.0 |
119.9 |
| C5 |
C5M |
H5MA |
H5M |
240.0 |
239.9 |
| C5 |
C5M |
H5MA |
H5MB |
120.0 |
120.0 |
| H5M |
C5M |
H5MA |
H5MB |
240.0 |
240.1 |
| C5 |
C5M |
H5MB |
H5M |
120.0 |
120.0 |
| C5 |
C5M |
H5MB |
H5MA |
240.0 |
240.0 |
| H5M |
C5M |
H5MB |
H5MA |
120.0 |
119.9 |
| H6' |
C6' |
C1' |
H1' |
295.5 |
297.5 |
| O4' |
C6' |
H6' |
H6'A |
239.5 |
240.0 |
| H6'A |
C6' |
C1' |
H1' |
55.5 |
57.6 |
| O4' |
C6' |
H6'A |
H6' |
120.5 |
119.9 |
| HOP1 |
OP1 |
P |
OP2 |
122.8 |
60.0 |