PDB Chemical Component F3D

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for F3D

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C C1 1.541 1.530
C1 C2 1.530 1.507
C26 C27 1.418 1.379
C26 C25 1.400 1.399
C27 C28 1.385 1.384
C2 C25 1.410 1.470
C2 C3 1.498 1.356
C25 C30 1.397 1.398
C28 C29 1.405 1.384
C22 N3 1.324 1.302
C22 C23 1.313 1.461
N3 N2 1.384 1.399
C24 C23 1.343 1.397
C24 C18 1.379 1.389
C23 C21 1.376 1.409
C18 C3 1.430 1.480
C18 C19 1.418 1.402
C3 C4 1.446 1.479
C21 N2 1.369 1.371
C21 C20 1.342 1.394
C30 C29 1.399 1.379
C19 C20 1.390 1.363
C5 C4 1.387 1.396
C5 C6 1.373 1.378
C4 C17 1.390 1.397
C6 C7 1.414 1.389
C17 C16 1.417 1.377
C7 C16 1.397 1.389
C7 O 1.356 1.359
O C8 1.439 1.428
C8 C9 1.542 1.530
C9 N 1.473 1.469
N C10 1.506 1.469
C10 C11 1.554 1.530
C11 C12 1.563 1.530
C12 C13 1.570 1.507
O1 C13 1.243 1.213
C13 N1 1.401 1.347
N1 C15 1.480 1.465
N1 C14 1.485 1.465
C1 H1 1.100 1.090
C1 H2 1.100 1.090
N2 H3 1.000 0.970
C5 H4 1.081 1.081
C6 H5 1.080 1.080
C8 H6 1.100 1.090
C8 H7 1.100 1.090
C9 H8 1.101 1.090
C9 H9 1.100 1.089
C10 H10 1.100 1.090
C10 H11 1.100 1.090
C11 H12 1.100 1.090
C11 H13 1.100 1.091
C12 H14 1.100 1.090
C12 H15 1.100 1.090
C14 H16 1.100 1.089
C14 H17 1.100 1.091
C14 H18 1.100 1.090
C15 H19 1.100 1.090
C15 H20 1.100 1.090
C15 H21 1.100 1.090
N H22 1.000 1.009
C16 H24 1.080 1.081
C17 H25 1.080 1.080
C H26 1.100 1.089
C H27 1.100 1.090
C H28 1.100 1.090
C30 H29 1.080 1.080
C29 H30 1.080 1.081
C28 H31 1.079 1.081
C27 H32 1.080 1.080
C26 H33 1.080 1.080
C24 H34 1.080 1.080
C22 H35 1.080 1.080
C20 H36 1.080 1.080
C19 H37 1.080 1.080

Bond Angles for F3D

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C C1 H1 108.7 109.5
C C1 H2 108.7 109.5
C1 C2 C25 115.3 120.0
C1 C2 C3 120.8 120.0
C2 C1 H1 108.7 109.4
C2 C1 H2 108.6 109.5
C26 C27 H32 120.6 119.9
C27 C28 H31 120.8 119.8
C3 C2 C25 123.7 120.0
C2 C25 C30 117.2 120.2
C2 C3 C4 122.2 120.0
C25 C30 C29 119.3 119.8
C25 C30 H29 120.3 120.1
C28 C29 H30 118.5 119.9
N3 C22 H35 124.5 126.2
C22 C23 C21 106.0 106.3
N3 N2 H3 127.9 125.4
C24 C23 C21 124.4 119.8
C23 C24 H34 119.0 120.3
C24 C18 C19 113.3 120.1
C23 C21 C20 116.1 119.8
C18 C19 C20 123.1 120.7
C18 C19 H37 118.5 119.6
C3 C4 C17 126.3 120.1
C21 N2 H3 127.9 125.4
C21 C20 H36 119.6 119.9
C29 C30 H29 120.3 120.1
C30 C29 H30 118.6 119.9
C19 C20 H36 119.6 119.9
C5 C4 C17 114.3 119.8
C5 C6 C7 124.4 120.1
C6 C5 H4 119.6 120.0
C5 C6 H5 117.8 120.0
C4 C17 C16 127.1 119.9
C4 C17 H25 116.4 120.0
C6 C7 C16 116.6 120.2
C6 C7 O 120.6 119.9
C7 C6 H5 117.8 119.9
C17 C16 H24 121.7 119.9
O C7 C16 122.7 119.9
C7 C16 H24 121.7 119.9
C7 O C8 127.9 117.0
O C8 H6 108.6 109.5
O C8 H7 108.6 109.5
C8 C9 N 112.6 109.5
C9 C8 H6 108.6 109.5
C9 C8 H7 108.6 109.4
C8 C9 H8 108.7 109.5
C8 C9 H9 108.7 109.5
C9 N C10 112.8 111.0
N C9 H8 108.7 109.5
N C9 H9 108.7 109.5
C9 N H22 108.6 111.0
N C10 H10 108.2 109.5
N C10 H11 108.2 109.5
C10 C11 C12 111.4 109.5
C11 C10 H10 108.3 109.4
C11 C10 H11 108.3 109.5
C10 C11 H12 109.0 109.5
C10 C11 H13 109.0 109.4
C11 C12 C13 114.1 109.5
C12 C11 H12 109.0 109.5
C12 C11 H13 109.0 109.5
C11 C12 H14 108.3 109.5
C11 C12 H15 108.3 109.4
O1 C13 C12 118.3 120.0
C13 C12 H14 108.3 109.5
C13 C12 H15 108.3 109.5
C13 N1 C15 121.7 120.0
C13 N1 C14 120.3 120.1
C14 N1 C15 118.1 120.0
N1 C15 H19 109.5 109.5
N1 C15 H20 109.5 109.5
N1 C15 H21 109.5 109.5
N1 C14 H16 109.5 109.5
N1 C14 H17 109.5 109.5
N1 C14 H18 109.5 109.5
H1 C1 H2 109.5 109.5
H6 C8 H7 109.5 109.4
H8 C9 H9 109.5 109.4
H10 C10 H11 109.5 109.5
H12 C11 H13 109.4 109.4
H14 C12 H15 109.5 109.5
H16 C14 H17 109.4 109.5
H16 C14 H18 109.5 109.5
H17 C14 H18 109.5 109.4
H19 C15 H20 109.5 109.5
H19 C15 H21 109.5 109.4
H20 C15 H21 109.5 109.4
H26 C H27 109.5 109.5
H26 C H28 109.4 109.5
H27 C H28 109.5 109.4

Torsion Angles for F3D

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C C1 C2 C25 75.6 274.8
C2 C1 C H1 239.5 119.9
C2 C1 C H2 120.5 240.0
H1 C1 C H2 240.9 120.0
C C1 C2 H1 120.5 240.0
C C1 C2 H2 239.5 120.0
C3 C2 C1 C25 175.0 180.0
C1 C2 C25 C30 233.5 295.0
C1 C2 C3 C4 189.9 185.4
H1 C1 C2 H2 119.1 240.0
C26 C27 C28 H31 177.3 179.7
C26 C25 C30 H29 182.5 180.2
C27 C28 C29 H30 182.1 180.1
C1 C2 C25 C3 174.8 180.0
C25 C2 C1 H1 315.1 34.8
C25 C2 C1 H2 196.1 154.7
C25 C2 C3 C4 4.5 5.3
C2 C25 C30 C29 177.8 180.0
C2 C25 C30 H29 357.8 0.0
C1 C2 C3 C25 185.5 180.0
C3 C2 C1 H1 130.1 214.7
C3 C2 C1 H2 11.1 334.7
C3 C2 C25 C30 58.7 115.0
C2 C3 C4 C17 233.2 115.0
C29 C30 C25 H29 180.0 180.0
C25 C30 C29 H30 178.0 180.0
C28 C29 C30 H29 178.0 180.0
C30 C29 C28 H30 180.0 180.0
N3 C22 C23 C21 2.6 0.0
C22 N3 N2 H3 183.5 180.0
C24 C23 C22 C21 173.9 180.0
C22 C23 C24 H34 359.4 360.0
C22 C23 C21 C20 179.3 180.0
C21 N2 N3 H3 180.0 180.2
C22 C23 C24 C21 187.2 180.0
C23 C24 C18 C19 7.8 0.0
C24 C23 C21 C20 5.1 0.0
C24 C18 C19 C20 353.5 0.0
C24 C18 C19 H37 173.6 180.0
C21 C23 C24 H34 172.3 179.9
C23 C21 N2 H3 178.0 180.0
C23 C21 C20 H36 176.6 179.9
C18 C19 C20 H36 184.6 180.1
C4 C3 C2 C25 4.5 5.3
C5 C4 C3 C17 179.5 180.4
C3 C4 C17 C16 182.0 179.8
C3 C4 C17 H25 2.0 0.1
N3 N2 C21 H3 180.0 179.8
C18 C19 C20 C21 4.6 360.0
C20 C21 N2 H3 358.5 0.2
C19 C20 C21 H36 180.0 180.1
C25 C30 C29 H29 180.0 180.0
C28 C29 C30 H30 180.0 180.0
C18 C19 C20 H37 180.0 180.0
C21 C20 C19 H36 180.0 179.9
C3 C4 C5 C17 180.5 179.6
C5 C4 C17 C16 2.5 359.4
C5 C4 C17 H25 182.5 179.7
C6 C5 C4 C17 357.4 0.3
C5 C6 C7 C16 0.5 360.0
C5 C6 C7 O 178.7 180.1
C7 C6 C5 H5 180.0 180.0
C4 C17 C16 H24 179.2 180.3
C7 C6 C5 H4 181.3 180.1
C5 C6 C7 H5 180.0 180.0
O C7 C6 C16 178.2 180.1
C6 C7 C16 H24 179.2 180.0
C6 C7 O C8 222.0 180.0
C4 C17 C16 H25 180.0 180.3
C7 C16 C17 H24 180.0 180.2
C4 C17 C16 C7 359.2 0.5
C6 C7 C16 O 178.1 180.1
C16 C7 C6 H5 180.6 180.0
C17 C16 C7 H24 180.0 179.8
C16 C7 O C8 40.0 0.1
C6 C7 O C16 182.0 179.9
O C7 C6 H5 358.7 0.1
O C7 C16 H24 1.1 359.9
C7 O C8 H6 338.8 59.9
C7 O C8 H7 97.8 299.9
C8 O C7 C16 40.0 0.1
C9 C8 O H6 239.5 120.0
C9 C8 O H7 120.5 240.0
O C8 C9 H8 35.4 185.0
O C8 C9 H9 154.5 304.9
H6 C8 O H7 241.0 120.0
C7 O C8 C9 218.3 180.0
O C8 C9 H6 120.5 239.9
O C8 C9 H7 239.5 120.0
C8 C9 N C10 165.0 180.0
N C9 C8 H8 239.5 240.0
N C9 C8 H9 120.5 120.1
C8 C9 N H22 285.6 303.9
H6 C8 C9 H7 119.0 240.1
H8 C9 C8 H9 240.9 240.0
N C9 C8 H6 154.4 185.1
N C9 C8 H7 35.4 305.0
C8 C9 N H8 120.4 120.0
C8 C9 N H9 239.5 240.0
C9 N C10 H10 217.9 60.0
C9 N C10 H11 336.5 300.0
H8 C9 N H9 119.1 120.0
C10 N C9 H8 44.6 60.0
C10 N C9 H9 285.5 300.0
C9 N C10 H22 120.5 124.0
C11 C10 N H10 239.3 119.9
C11 C10 N H11 120.7 240.0
N C10 C11 H12 303.6 300.1
N C10 C11 H13 63.0 60.0
H10 C10 N H11 241.4 120.0
C9 N C10 C11 97.2 180.0
N C10 C11 H10 120.7 240.0
N C10 C11 H11 239.3 120.1
C10 C11 C12 C13 83.5 180.0
C12 C11 C10 H12 239.7 240.0
C12 C11 C10 H13 120.3 120.1
C10 C11 C12 H14 204.2 300.0
C10 C11 C12 H15 322.8 60.0
H10 C10 C11 H11 118.6 240.1
H12 C11 C10 H13 240.6 240.1
C12 C11 C10 H10 62.6 300.0
C12 C11 C10 H11 304.0 60.0
C10 C11 C12 H12 120.3 120.0
C10 C11 C12 H13 239.7 240.0
O1 C13 C12 C11 11.4 0.0
C13 C12 C11 H14 239.3 240.0
C13 C12 C11 H15 120.7 120.0
H12 C11 C12 H13 119.4 119.9
H14 C12 C11 H15 241.4 240.0
C13 C12 C11 H12 323.2 60.0
C13 C12 C11 H13 203.8 300.0
C11 C12 C13 H14 120.7 120.0
C11 C12 C13 H15 239.3 240.0
C12 C13 N1 C15 0.5 180.0
C12 C13 N1 C14 178.9 0.0
H14 C12 C13 H15 118.6 120.0
C11 C12 C13 O1 11.4 0.0
O1 C13 C12 H14 250.7 240.0
O1 C13 C12 H15 132.1 120.0
O1 C13 N1 C15 179.6 360.0
O1 C13 N1 C14 358.0 180.0
C14 N1 C13 C15 178.4 180.0
C13 N1 C15 H19 180.0 270.0
C13 N1 C15 H20 300.0 30.0
C13 N1 C15 H21 60.0 150.0
C13 N1 C14 H16 180.0 180.0
C13 N1 C14 H17 300.0 300.0
C13 N1 C14 H18 60.0 60.0
C13 N1 C15 C14 178.4 180.0
C15 N1 C14 H16 358.5 0.0
C15 N1 C14 H17 118.5 120.0
C15 N1 C14 H18 238.5 240.0
H19 C15 N1 H20 240.0 240.0
H19 C15 N1 H21 120.0 120.0
H20 C15 N1 H21 240.0 240.0
C13 N1 C14 C15 181.5 180.0
C14 N1 C15 H19 1.6 90.0
C14 N1 C15 H20 121.5 210.0
C14 N1 C15 H21 241.6 330.0
H16 C14 N1 H17 240.0 240.0
H16 C14 N1 H18 120.0 120.0
H17 C14 N1 H18 240.0 240.0
C C1 H1 H2 118.6 240.0
H1 C1 C2 C25 315.1 34.8
H1 C1 C2 C3 130.1 214.7
C2 C1 H1 H2 241.5 120.0
C C1 H2 H1 241.4 120.0
H2 C1 C2 C25 196.1 154.7
H2 C1 C2 C3 11.1 334.7
C2 C1 H2 H1 118.5 240.1
H4 C5 C4 C17 177.4 180.2
H4 C5 C6 C7 181.3 180.1
H4 C5 C6 H5 1.3 0.0
C5 C6 H5 C7 180.0 180.0
H5 C6 C5 H4 1.3 0.0
H5 C6 C7 C16 180.6 180.0
H5 C6 C7 O 358.7 0.1
O C8 H6 H7 118.5 240.0
H6 C8 C9 N 154.4 185.1
C9 C8 H6 H7 241.6 119.9
H6 C8 C9 H8 274.9 305.0
H6 C8 C9 H9 33.9 65.0
O C8 H7 H6 241.5 120.0
H7 C8 C9 N 35.4 305.0
C9 C8 H7 H6 118.4 240.0
H7 C8 C9 H8 155.9 65.0
H7 C8 C9 H9 275.0 184.9
C8 C9 H8 N 237.1 240.0
H8 C9 C8 H6 274.9 305.0
H8 C9 C8 H7 155.9 65.0
C8 C9 H8 H9 118.6 120.0
H8 C9 N C10 44.6 60.0
N C9 H8 H9 241.4 239.9
H8 C9 N H22 165.1 183.9
C8 C9 H9 N 122.9 120.0
H9 C9 C8 H6 33.9 65.0
H9 C9 C8 H7 275.0 184.9
C8 C9 H9 H8 241.4 240.0
H9 C9 N C10 285.5 300.0
N C9 H9 H8 118.6 120.0
H9 C9 N H22 46.1 63.9
N C10 H10 H11 117.8 240.0
H10 C10 C11 C12 62.6 300.0
C11 C10 H10 H11 242.2 120.0
H10 C10 C11 H12 182.9 60.1
H10 C10 C11 H13 302.3 180.0
N C10 H11 H10 242.2 120.0
H11 C10 C11 C12 304.0 60.0
C11 C10 H11 H10 117.8 240.1
H11 C10 C11 H12 64.3 180.0
H11 C10 C11 H13 183.7 299.9
C10 C11 H12 C12 238.2 239.9
H12 C11 C10 H10 182.9 60.1
H12 C11 C10 H11 64.3 180.0
C10 C11 H12 H13 119.1 119.9
H12 C11 C12 C13 323.2 60.0
C12 C11 H12 H13 240.9 240.0
H12 C11 C12 H14 83.8 180.0
H12 C11 C12 H15 202.5 300.0
C10 C11 H13 C12 121.8 120.1
H13 C11 C10 H10 302.3 180.0
H13 C11 C10 H11 183.7 299.9
C10 C11 H13 H12 240.9 240.0
H13 C11 C12 C13 203.8 300.0
C12 C11 H13 H12 119.1 120.0
H13 C11 C12 H14 324.5 60.1
H13 C11 C12 H15 83.1 180.0
C11 C12 H14 C13 235.8 240.0
H14 C12 C11 H12 83.8 180.0
H14 C12 C11 H13 324.5 60.1
C11 C12 H14 H15 117.9 120.0
C13 C12 H14 H15 242.1 240.0
C11 C12 H15 C13 124.2 120.0
H15 C12 C11 H12 202.5 300.0
H15 C12 C11 H13 83.1 180.0
C11 C12 H15 H14 242.1 240.0
C13 C12 H15 H14 117.9 120.0
H16 C14 N1 C15 358.5 0.0
N1 C14 H16 H17 120.0 120.0
N1 C14 H16 H18 240.0 240.0
H17 C14 H16 H18 120.0 120.0
H17 C14 N1 C15 118.5 120.0
N1 C14 H17 H16 240.0 240.0
N1 C14 H17 H18 120.0 120.0
H16 C14 H17 H18 240.1 240.0
H18 C14 N1 C15 238.5 240.0
N1 C14 H18 H16 120.1 120.0
N1 C14 H18 H17 240.0 240.0
H16 C14 H18 H17 119.9 120.0
N1 C15 H19 H20 120.0 120.1
N1 C15 H19 H21 240.0 240.0
H20 C15 H19 H21 120.0 119.9
N1 C15 H20 H19 240.0 239.9
N1 C15 H20 H21 120.0 120.1
H19 C15 H20 H21 240.0 240.1
N1 C15 H21 H19 120.0 120.0
N1 C15 H21 H20 240.0 240.0
H19 C15 H21 H20 120.0 119.9
C9 N H22 C10 236.9 236.1
H22 N C9 H8 165.1 183.9
H22 N C9 H9 46.1 63.9
H22 N C10 H10 97.4 296.0
H22 N C10 H11 215.9 176.0
C4 C17 H25 C16 180.0 179.7
H25 C17 C16 H24 359.2 0.0
H26 C C1 H1 300.5 185.0
H26 C C1 H2 59.6 65.0
H27 C H26 H28 120.0 120.0
H27 C C1 H1 60.5 305.0
H27 C C1 H2 179.6 185.0
H26 C H27 H28 240.0 240.0
H28 C C1 H1 180.5 65.0
H28 C C1 H2 299.6 304.9
H26 C H28 H27 120.0 120.0
C25 C30 H29 C29 180.0 180.0
H29 C30 C29 H30 358.1 0.0
H30 C29 C30 H29 358.1 0.0
H31 C28 C29 H30 2.1 360.0
H32 C27 C28 H31 357.3 0.1
H33 C26 C27 H32 3.5 359.7
H34 C24 C23 C21 172.3 179.9
H34 C24 C18 C19 187.8 180.1
H35 C22 C23 C21 182.6 179.8
C18 C19 H37 C20 180.0 180.0
H37 C19 C20 H36 4.6 0.1