PDB Chemical Component F2Y
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for F2Y
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| F1 |
CE1 |
1.359 |
1.352 |
| OH |
CZ |
1.360 |
1.361 |
| CE1 |
CZ |
1.388 |
1.388 |
| CE1 |
CD1 |
1.392 |
1.383 |
| CZ |
CE2 |
1.386 |
1.388 |
| CD1 |
CG |
1.394 |
1.383 |
| CE2 |
F2 |
1.360 |
1.351 |
| CE2 |
CD2 |
1.389 |
1.384 |
| N |
CA |
1.470 |
1.469 |
| CG |
CD2 |
1.391 |
1.382 |
| CG |
CB |
1.391 |
1.508 |
| CB |
CA |
1.529 |
1.530 |
| CA |
C |
1.529 |
1.507 |
| O |
C |
1.249 |
1.208 |
| C |
OXT |
1.250 |
1.341 |
| OXT |
HXT |
0.950 |
0.968 |
| CA |
HA |
1.100 |
1.090 |
| N |
H |
1.000 |
1.009 |
| N |
H2 |
1.000 |
1.009 |
| CB |
H6 |
1.100 |
1.089 |
| CB |
H7 |
1.100 |
1.090 |
| CD1 |
H8 |
1.079 |
1.080 |
| CD2 |
H9 |
1.080 |
1.081 |
| OH |
H10 |
0.950 |
0.966 |
Bond Angles for F2Y
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| F1 |
CE1 |
CZ |
120.6 |
120.0 |
| CE1 |
CZ |
CE2 |
122.3 |
119.9 |
| CE1 |
CD1 |
H8 |
120.1 |
120.0 |
| CD1 |
CG |
CD2 |
120.4 |
120.2 |
| CE2 |
CD2 |
H9 |
119.9 |
120.0 |
| N |
CA |
HA |
109.6 |
109.5 |
| CG |
CD2 |
H9 |
119.8 |
120.0 |
| CG |
CB |
H6 |
109.3 |
109.5 |
| CG |
CB |
H7 |
109.3 |
109.5 |
| CB |
CA |
HA |
108.8 |
109.5 |
| C |
OXT |
HXT |
109.5 |
117.0 |
| H |
N |
H2 |
109.5 |
111.0 |
| H6 |
CB |
H7 |
109.5 |
109.5 |
Torsion Angles for F2Y
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| F1 |
CE1 |
CZ |
CE2 |
180.1 |
180.2 |
| F1 |
CE1 |
CD1 |
H8 |
359.9 |
0.0 |
| CZ |
CE1 |
CD1 |
H8 |
179.9 |
180.0 |
| CE1 |
CD1 |
CG |
CD2 |
0.1 |
360.0 |
| CZ |
CE2 |
CD2 |
H9 |
179.9 |
180.6 |
| CD1 |
CG |
CD2 |
H9 |
180.0 |
179.7 |
| CD1 |
CG |
CB |
H6 |
232.2 |
150.3 |
| CD1 |
CG |
CB |
H7 |
351.9 |
30.2 |
| CE1 |
CZ |
CE2 |
F2 |
179.9 |
180.0 |
| F2 |
CE2 |
CD2 |
H9 |
0.0 |
0.0 |
| CE1 |
CZ |
CE2 |
CD2 |
0.0 |
359.5 |
| CG |
CD2 |
CE2 |
H9 |
180.0 |
180.0 |
| CB |
CA |
N |
HA |
120.2 |
120.1 |
| CE2 |
CD2 |
CG |
H9 |
180.0 |
180.0 |
| CD2 |
CG |
CB |
H6 |
51.6 |
330.0 |
| CD2 |
CG |
CB |
H7 |
171.4 |
210.0 |
| CG |
CB |
CA |
HA |
61.3 |
55.0 |
| H6 |
CB |
CG |
H7 |
240.2 |
120.1 |
| N |
CA |
CB |
HA |
239.3 |
240.0 |
| CA |
C |
OXT |
HXT |
180.3 |
180.0 |
| O |
C |
OXT |
HXT |
0.0 |
360.0 |
| H |
N |
CA |
HA |
59.8 |
180.0 |
| H2 |
N |
CA |
HA |
179.8 |
304.0 |
| CG |
CB |
H6 |
H7 |
119.7 |
239.9 |
| H6 |
CB |
CA |
HA |
301.2 |
175.0 |
| CG |
CB |
H7 |
H6 |
240.3 |
120.0 |
| H7 |
CB |
CA |
HA |
181.5 |
295.0 |
| H8 |
CD1 |
CG |
CD2 |
180.1 |
180.0 |