PDB Chemical Component F2T

Ideal Model

Chemical Description

Name 2'-deoxy-2'-fluoro-5'-O-thiophosphonouridine
Formula C9 H12 F N2 O7 P S
Formal charge 0
Molecular weight 342.238 g/mol
Component type RNA linking
Nonstandard Parent Id U

Chemical features

Atom count 33
Chiral atom count 4
Chiral atoms C4' C3' C2' C1'
Observed leaving atoms HO3' OP3 HOP3
Bond count 34
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 2'-deoxy-2'-fluoro-5'-O-thiophosphonouridine
Systematic name (OpenEye OEToolkits) [(2~{R},3~{R},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-4-fluoranyl-3-oxidanyl-oxolan-2-yl]methoxy-sulfanyl-phosphinic acid

Chemical Descriptors

Stereo SMILES (CACTVS) O[C@H]1[C@@H](F)[C@@H](O[C@@H]1CO[P](O)(S)=O)N2C=CC(=O)NC2=O
SMILES (CACTVS) O[CH]1[CH](F)[CH](O[CH]1CO[P](O)(S)=O)N2C=CC(=O)NC2=O
Stereo SMILES (OpenEye) C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)S)O)F
InChI descriptor InChI=1S/C9H12FN2O7PS/c10-6-7(14)4(3-18-20(16,17)21)19-8(6)12-2-1-5(13)11-9(12)15/h1-2,4,6-8,14H,3H2,(H,11,13,15)(H2,16,17,21)/t4-,6-,7-,8-/m1/s1
InChIKey descriptor GAVMOIRMDKJPDM-XVFCMESISA-N

Status Information

Last modified 2016-07-15
Created 2016-05-13
Release status REL
Model PDB code 5JS2
Processing site RCSB