PDB Chemical Component F2A
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for F2A
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O5' |
PA |
1.594 |
1.610 |
| PA |
C3A |
1.877 |
1.823 |
| PA |
O2A |
1.483 |
1.479 |
| PA |
O1A |
1.489 |
1.609 |
| O1A |
HO1A |
0.950 |
0.967 |
| PB |
C3A |
1.874 |
1.823 |
| C3A |
H3A |
1.100 |
1.090 |
| C3A |
H3AA |
1.100 |
1.090 |
| C5' |
O5' |
1.424 |
1.429 |
| O1B |
PB |
1.487 |
1.480 |
| PB |
O2B |
1.489 |
1.610 |
| PB |
O3B |
1.497 |
1.610 |
| O2B |
HO2B |
0.950 |
0.967 |
| O3B |
PG |
1.492 |
1.611 |
| PG |
O1G |
1.484 |
1.480 |
| PG |
O3G |
1.486 |
1.610 |
| PG |
O2G |
1.487 |
1.610 |
| O2G |
HO2G |
0.950 |
0.967 |
| O3G |
HO3G |
0.950 |
0.967 |
| C4' |
C5' |
1.511 |
1.529 |
| C5' |
H5' |
1.100 |
1.090 |
| C5' |
H5'A |
1.100 |
1.090 |
| C3' |
C4' |
1.515 |
1.551 |
| O4' |
C4' |
1.450 |
1.444 |
| C4' |
H4' |
1.100 |
1.090 |
| C1' |
O4' |
1.423 |
1.437 |
| C2' |
C1' |
1.530 |
1.541 |
| C1' |
N9 |
1.467 |
1.466 |
| C1' |
H1' |
1.100 |
1.090 |
| C4 |
N9 |
1.377 |
1.372 |
| N9 |
C8 |
1.379 |
1.363 |
| N3 |
C4 |
1.342 |
1.328 |
| C4 |
C5 |
1.387 |
1.405 |
| C2 |
N3 |
1.330 |
1.317 |
| C2 |
N1 |
1.337 |
1.320 |
| C2 |
H2 |
1.080 |
1.081 |
| N1 |
C6 |
1.349 |
1.329 |
| C6 |
N6 |
1.336 |
1.384 |
| C6 |
C5 |
1.405 |
1.405 |
| N6 |
HN6 |
1.000 |
0.970 |
| N6 |
HN6A |
1.000 |
0.970 |
| C5 |
N7 |
1.387 |
1.354 |
| C8 |
N7 |
1.314 |
1.301 |
| C8 |
H8 |
1.080 |
1.081 |
| C2' |
C3' |
1.521 |
1.550 |
| C2' |
H2' |
1.100 |
1.090 |
| C2' |
H2'A |
1.100 |
1.091 |
| O3' |
C3' |
1.418 |
1.429 |
| C3' |
H3' |
1.100 |
1.090 |
| O3' |
HO3' |
0.950 |
0.967 |
Bond Angles for F2A
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O2A |
PA |
C3A |
105.2 |
109.5 |
| O1A |
PA |
C3A |
103.4 |
109.4 |
| PA |
C3A |
H3A |
103.2 |
109.4 |
| PA |
C3A |
H3AA |
98.4 |
109.5 |
| O1A |
PA |
O2A |
119.5 |
109.5 |
| PA |
O1A |
HO1A |
109.5 |
114.0 |
| PB |
C3A |
H3A |
103.2 |
109.5 |
| PB |
C3A |
H3AA |
98.4 |
109.5 |
| H3A |
C3A |
H3AA |
127.3 |
109.4 |
| O1B |
PB |
O2B |
119.7 |
109.5 |
| O1B |
PB |
O3B |
108.2 |
109.5 |
| O2B |
PB |
O3B |
108.9 |
109.4 |
| PB |
O2B |
HO2B |
109.5 |
114.1 |
| PB |
O3B |
PG |
120.2 |
134.0 |
| O3B |
PG |
O1G |
104.7 |
109.5 |
| O3B |
PG |
O3G |
108.4 |
109.5 |
| O3B |
PG |
O2G |
109.8 |
109.5 |
| O1G |
PG |
O3G |
108.1 |
109.5 |
| O1G |
PG |
O2G |
119.7 |
109.5 |
| O2G |
PG |
O3G |
105.8 |
109.5 |
| PG |
O3G |
HO3G |
109.5 |
114.0 |
| PG |
O2G |
HO2G |
109.5 |
114.0 |
| C4' |
C5' |
H5' |
109.1 |
109.5 |
| C4' |
C5' |
H5'A |
109.0 |
109.4 |
| H5' |
C5' |
H5'A |
110.2 |
109.5 |
| C3' |
C4' |
H4' |
110.4 |
110.6 |
| O4' |
C4' |
H4' |
115.0 |
110.6 |
| C2' |
C1' |
H1' |
108.9 |
110.0 |
| N9 |
C1' |
H1' |
106.8 |
109.8 |
| C1' |
N9 |
C8 |
128.4 |
126.2 |
| C4 |
N9 |
C8 |
105.6 |
107.5 |
| N9 |
C8 |
N7 |
113.8 |
109.9 |
| N9 |
C8 |
H8 |
123.1 |
125.0 |
| N3 |
C4 |
C5 |
126.7 |
119.1 |
| C4 |
C5 |
C6 |
117.0 |
118.1 |
| C4 |
C5 |
N7 |
110.8 |
107.2 |
| N1 |
C2 |
H2 |
115.3 |
118.8 |
| C2 |
N1 |
C6 |
118.6 |
121.2 |
| N1 |
C6 |
N6 |
118.6 |
120.7 |
| N1 |
C6 |
C5 |
117.7 |
118.5 |
| N6 |
C6 |
C5 |
123.7 |
120.8 |
| C6 |
N6 |
HN6 |
109.5 |
120.0 |
| C6 |
N6 |
HN6A |
109.5 |
120.0 |
| C6 |
C5 |
N7 |
132.2 |
134.7 |
| HN6 |
N6 |
HN6A |
109.5 |
120.0 |
| C3' |
C2' |
H2' |
112.3 |
110.3 |
| C3' |
C2' |
H2'A |
114.0 |
110.5 |
| C2' |
C3' |
H3' |
113.3 |
110.9 |
| H2' |
C2' |
H2'A |
103.3 |
110.6 |
| O3' |
C3' |
H3' |
105.9 |
110.9 |
Torsion Angles for F2A
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O5' |
PA |
C3A |
H3A |
69.5 |
300.0 |
| O5' |
PA |
C3A |
H3AA |
201.1 |
60.0 |
| O5' |
PA |
O1A |
HO1A |
207.2 |
59.9 |
| O1A |
PA |
C3A |
O2A |
233.9 |
240.0 |
| C3A |
PA |
O1A |
HO1A |
85.8 |
299.9 |
| PB |
C3A |
PA |
H3A |
240.0 |
240.0 |
| PB |
C3A |
PA |
H3AA |
108.4 |
120.1 |
| H3A |
C3A |
PA |
H3AA |
228.4 |
240.1 |
| O1A |
PA |
O2A |
C3A |
115.4 |
120.0 |
| O2A |
PA |
C3A |
H3A |
313.4 |
180.0 |
| O2A |
PA |
C3A |
H3AA |
85.0 |
299.9 |
| O2A |
PA |
O1A |
HO1A |
329.5 |
180.0 |
| O2A |
PA |
O1A |
C3A |
243.6 |
240.0 |
| O1A |
PA |
C3A |
H3A |
187.3 |
60.0 |
| O1A |
PA |
C3A |
H3AA |
318.9 |
179.9 |
| HO1A |
O1A |
PA |
C3A |
85.8 |
299.9 |
| HO1A |
O1A |
PA |
O2A |
329.5 |
180.0 |
| PA |
C3A |
PB |
H3A |
120.0 |
120.0 |
| PA |
C3A |
PB |
H3AA |
251.6 |
240.0 |
| H3A |
C3A |
PB |
H3AA |
131.6 |
120.0 |
| PA |
C3A |
H3A |
H3AA |
111.5 |
119.9 |
| PB |
C3A |
H3A |
H3AA |
248.5 |
239.9 |
| PA |
C3A |
H3AA |
H3A |
246.3 |
240.1 |
| PB |
C3A |
H3AA |
H3A |
113.7 |
120.0 |
| O1B |
PB |
C3A |
H3A |
324.8 |
300.0 |
| O1B |
PB |
C3A |
H3AA |
193.3 |
180.0 |
| O2B |
PB |
O1B |
O3B |
234.5 |
240.0 |
| O1B |
PB |
O2B |
HO2B |
181.7 |
180.1 |
| O1B |
PB |
O3B |
PG |
162.1 |
300.0 |
| O2B |
PB |
C3A |
H3A |
196.2 |
180.0 |
| O2B |
PB |
C3A |
H3AA |
64.6 |
60.0 |
| O1B |
PB |
O2B |
O3B |
125.1 |
120.0 |
| O2B |
PB |
O3B |
PG |
293.7 |
60.0 |
| O3B |
PB |
C3A |
H3A |
79.9 |
60.1 |
| O3B |
PB |
C3A |
H3AA |
308.3 |
300.0 |
| O1B |
PB |
O3B |
O2B |
228.4 |
240.0 |
| O3B |
PB |
O2B |
HO2B |
56.6 |
60.0 |
| PB |
O3B |
PG |
O1G |
253.9 |
320.0 |
| PB |
O3B |
PG |
O3G |
9.0 |
200.0 |
| PB |
O3B |
PG |
O2G |
124.2 |
80.0 |
| HO2B |
O2B |
PB |
O3B |
56.6 |
60.0 |
| O1G |
PG |
O3B |
O3G |
244.8 |
120.0 |
| O1G |
PG |
O3B |
O2G |
129.7 |
240.0 |
| O2G |
PG |
O3B |
O3G |
115.1 |
240.0 |
| O3B |
PG |
O3G |
HO3G |
171.5 |
180.0 |
| O3B |
PG |
O2G |
HO2G |
19.0 |
60.0 |
| O3B |
PG |
O1G |
O3G |
115.4 |
240.0 |
| O3B |
PG |
O1G |
O2G |
236.4 |
120.0 |
| O2G |
PG |
O1G |
O3G |
239.0 |
120.0 |
| O1G |
PG |
O3G |
HO3G |
284.5 |
60.0 |
| O1G |
PG |
O2G |
HO2G |
258.0 |
180.0 |
| O3B |
PG |
O3G |
O1G |
247.0 |
120.0 |
| O3B |
PG |
O3G |
O2G |
117.7 |
240.0 |
| O1G |
PG |
O3G |
O2G |
230.7 |
120.0 |
| O3G |
PG |
O2G |
HO2G |
135.8 |
300.0 |
| O3B |
PG |
O2G |
O1G |
121.1 |
240.0 |
| O3B |
PG |
O2G |
O3G |
243.2 |
120.0 |
| O1G |
PG |
O2G |
O3G |
122.1 |
240.0 |
| O2G |
PG |
O3G |
HO3G |
53.8 |
300.0 |
| HO2G |
O2G |
PG |
O3G |
135.8 |
300.0 |
| H5' |
C5' |
C4' |
H5'A |
120.4 |
120.0 |
| C4' |
C5' |
H5' |
H5'A |
240.4 |
240.0 |
| C4' |
C5' |
H5'A |
H5' |
119.7 |
120.0 |
| C3' |
C4' |
C5' |
H5' |
317.6 |
62.8 |
| C3' |
C4' |
C5' |
H5'A |
197.2 |
302.8 |
| O4' |
C4' |
C3' |
H4' |
236.6 |
241.5 |
| O4' |
C4' |
C5' |
H5' |
201.4 |
308.6 |
| O4' |
C4' |
C5' |
H5'A |
81.0 |
188.6 |
| C3' |
C4' |
O4' |
H4' |
120.4 |
118.5 |
| H4' |
C4' |
C5' |
H5' |
78.0 |
185.7 |
| H4' |
C4' |
C5' |
H5'A |
317.6 |
65.7 |
| C1' |
O4' |
C4' |
H4' |
265.2 |
281.4 |
| N9 |
C1' |
C2' |
H1' |
241.7 |
239.0 |
| C2' |
C1' |
N9 |
H1' |
119.5 |
121.1 |
| C4 |
N9 |
C1' |
C8 |
178.9 |
180.3 |
| C1' |
N9 |
C8 |
N7 |
178.4 |
179.9 |
| C1' |
N9 |
C8 |
H8 |
358.3 |
0.0 |
| H1' |
C1' |
N9 |
C8 |
146.3 |
144.5 |
| C4 |
N9 |
C1' |
H1' |
325.2 |
324.9 |
| C1' |
N9 |
C4 |
C8 |
180.9 |
179.7 |
| C4 |
N9 |
C8 |
N7 |
359.3 |
359.6 |
| C4 |
N9 |
C8 |
H8 |
179.3 |
179.8 |
| C8 |
N9 |
C1' |
H1' |
146.3 |
144.5 |
| N3 |
C4 |
N9 |
C8 |
180.2 |
180.2 |
| N3 |
C4 |
C5 |
C6 |
359.9 |
0.0 |
| N3 |
C4 |
C5 |
N7 |
180.0 |
180.0 |
| C5 |
C4 |
N9 |
C8 |
0.6 |
0.2 |
| N1 |
C6 |
C5 |
C4 |
359.7 |
0.0 |
| N6 |
C6 |
C5 |
C4 |
179.6 |
180.0 |
| C6 |
C5 |
C4 |
N7 |
179.9 |
180.0 |
| C2 |
N3 |
C4 |
C5 |
0.3 |
359.9 |
| C2 |
N1 |
C6 |
N6 |
180.6 |
180.0 |
| C2 |
N1 |
C6 |
C5 |
0.5 |
360.0 |
| H2 |
C2 |
N1 |
C6 |
179.6 |
180.0 |
| C4 |
C5 |
C6 |
N1 |
359.7 |
0.0 |
| C6 |
N1 |
C2 |
H2 |
179.6 |
180.0 |
| N6 |
C6 |
N1 |
C5 |
180.1 |
180.0 |
| N1 |
C6 |
N6 |
HN6 |
341.0 |
359.9 |
| N1 |
C6 |
N6 |
HN6A |
101.1 |
180.0 |
| N1 |
C6 |
C5 |
N7 |
179.6 |
180.0 |
| C4 |
C5 |
C6 |
N6 |
179.6 |
180.0 |
| N1 |
C6 |
N6 |
C5 |
179.9 |
180.0 |
| N6 |
C6 |
C5 |
N7 |
359.5 |
0.0 |
| HN6 |
N6 |
C6 |
HN6A |
239.9 |
179.9 |
| C4 |
C5 |
C6 |
N7 |
180.1 |
180.0 |
| N1 |
C6 |
C5 |
N6 |
180.1 |
180.0 |
| C5 |
C6 |
N6 |
HN6 |
161.2 |
180.0 |
| C5 |
C6 |
N6 |
HN6A |
281.2 |
0.0 |
| HN6 |
N6 |
C6 |
C5 |
161.2 |
180.0 |
| C6 |
N6 |
HN6 |
HN6A |
120.1 |
180.1 |
| HN6A |
N6 |
C6 |
C5 |
281.2 |
0.0 |
| C6 |
N6 |
HN6A |
HN6 |
239.9 |
179.9 |
| N9 |
C8 |
N7 |
C5 |
0.4 |
0.4 |
| C4 |
C5 |
N7 |
C6 |
179.9 |
180.0 |
| N9 |
C8 |
N7 |
H8 |
180.0 |
180.1 |
| N9 |
C8 |
H8 |
N7 |
180.0 |
179.8 |
| C2' |
C3' |
C4' |
H4' |
83.4 |
81.7 |
| C3' |
C2' |
C1' |
H1' |
213.9 |
242.6 |
| H2' |
C2' |
C3' |
H2'A |
117.1 |
122.6 |
| O3' |
C3' |
C2' |
H3' |
240.8 |
236.3 |
| H2' |
C2' |
C1' |
H1' |
333.9 |
1.1 |
| C3' |
C2' |
H2' |
H2'A |
236.7 |
237.4 |
| H2' |
C2' |
C3' |
H3' |
154.7 |
144.1 |
| H2'A |
C2' |
C1' |
H1' |
91.0 |
123.8 |
| C3' |
C2' |
H2'A |
H2' |
122.2 |
122.4 |
| H2'A |
C2' |
C3' |
H3' |
37.6 |
21.5 |
| O3' |
C3' |
C4' |
H4' |
325.4 |
323.5 |
| O3' |
C3' |
C2' |
H2' |
35.5 |
20.4 |
| O3' |
C3' |
C2' |
H2'A |
278.4 |
257.8 |
| C2' |
C3' |
O3' |
H3' |
123.6 |
123.7 |
| H3' |
C3' |
C4' |
H4' |
206.2 |
199.8 |
| H3' |
C3' |
C2' |
H2' |
154.7 |
144.1 |
| H3' |
C3' |
C2' |
H2'A |
37.6 |
21.5 |
| HO3' |
O3' |
C3' |
H3' |
228.7 |
297.8 |