Atom Nomenclature for F17

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for F17

Atom Name (V3) Atom Name (V2)
C1 C1
C2 C2
C3 C3
C4 C4
C5 C5
C6 C6
C20 C20
C21 C21
O24 O24
N25 N25
C26 C26
C27 C27
O30 O30
N31 N31
C32 C32
C33 C33
O34 O34
C35 C35
N40 N40
C43 C43
C46 C46
C47 C47
C48 C48
C49 C49
C50 C50
C7 C7
C71 C71
C72 C72
C73 C73
N74 N74
S75 S75
O67 O67
O77 O77
O78 O78
C61 C61
C62 C62
C63 C63
C64 C64
C65 C65
C66 C66
C8 C8
C9 C9
C10 C10
S1 S1
N1 N1
O1 O1
O2 O2
O3 O3
H1 H1
H3 H3
H4 H4
H6 H6
H201 1H20
H202 2H20
H25 H25
H26 H26
H31 H31
H32 H32
H351 1H35
H352 2H35
H401 1H40
H402 2H40
H46 H46
H47 H47
H48 H48
H49 H49
H50 H50
H7C1 1H7C
H7C2 2H7C
H72 H72
H74 H74
H62 H62
H63 H63
H65 H65
H66 H66
H9 H9
HA HA