Atom Nomenclature for F10

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for F10

Atom Name (V3) Atom Name (V2)
N1 N1
O3 O3
C10 C10
C11 C11
C9 C9
C14 C14
C17 C17
C18 C18
C15 C15
C16 C16
C21 C21
C22 C22
C19 C19
C12 C12
C13 C13
C2 C2
C4 C4
C5 C5
C7 C7
C8 C8
F6 F6
N20 N20
N23 N23
HN1 HN1
H10 H10
H11 H11
H9 H9
H14 H14
H171 1H17
H172 2H17
H181 1H18
H182 2H18
H21 H21
H22 H22
H7 H7
H8 H8
HN20 HN20