PDB Chemical Component F0Y
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for F0Y
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C |
O |
1.447 |
1.452 |
C23 |
N |
1.475 |
1.469 |
C23 |
C22 |
1.531 |
1.532 |
O |
C1 |
1.341 |
1.347 |
N |
C1 |
1.346 |
1.347 |
N |
C2 |
1.467 |
1.470 |
C1 |
O1 |
1.207 |
1.216 |
C22 |
C4 |
1.527 |
1.531 |
C2 |
C3 |
1.522 |
1.532 |
C4 |
C3 |
1.533 |
1.531 |
C4 |
C5 |
1.535 |
1.529 |
C18 |
C17 |
1.387 |
1.383 |
C18 |
C19 |
1.403 |
1.385 |
C20 |
C19 |
1.500 |
1.507 |
C17 |
C16 |
1.393 |
1.398 |
C5 |
C6 |
1.510 |
1.507 |
C19 |
N4 |
1.346 |
1.317 |
C7 |
C6 |
1.392 |
1.382 |
C7 |
C8 |
1.391 |
1.383 |
C6 |
C11 |
1.395 |
1.382 |
C8 |
C9 |
1.393 |
1.382 |
C16 |
C21 |
1.378 |
1.406 |
C16 |
N3 |
1.388 |
1.357 |
N4 |
C21 |
1.348 |
1.323 |
C21 |
N5 |
1.373 |
1.382 |
N3 |
C15 |
1.355 |
1.310 |
C11 |
C10 |
1.392 |
1.383 |
C9 |
C10 |
1.393 |
1.383 |
C10 |
C12 |
1.523 |
1.506 |
N5 |
C15 |
1.320 |
1.366 |
C15 |
N2 |
1.353 |
1.378 |
C12 |
N2 |
1.467 |
1.465 |
C12 |
C13 |
1.565 |
1.530 |
C13 |
C14 |
1.461 |
1.472 |
C14 |
N1 |
1.129 |
1.137 |
C2 |
H1 |
1.100 |
1.090 |
C2 |
H2 |
1.099 |
1.090 |
C3 |
H3 |
1.100 |
1.090 |
C3 |
H4 |
1.100 |
1.090 |
C11 |
H5 |
1.080 |
1.080 |
C12 |
H6 |
1.100 |
1.091 |
C13 |
H7 |
1.100 |
1.089 |
C13 |
H8 |
1.100 |
1.090 |
C17 |
H9 |
1.081 |
1.080 |
C18 |
H10 |
1.080 |
1.080 |
C20 |
H11 |
1.100 |
1.090 |
C20 |
H12 |
1.100 |
1.090 |
C20 |
H13 |
1.100 |
1.090 |
C22 |
H14 |
1.100 |
1.090 |
C22 |
H15 |
1.100 |
1.090 |
C23 |
H16 |
1.100 |
1.090 |
C23 |
H17 |
1.100 |
1.090 |
N2 |
H18 |
1.000 |
0.971 |
N5 |
H19 |
1.000 |
0.970 |
C9 |
H21 |
1.080 |
1.080 |
C8 |
H22 |
1.080 |
1.080 |
C7 |
H23 |
1.080 |
1.080 |
C5 |
H24 |
1.100 |
1.090 |
C5 |
H25 |
1.100 |
1.090 |
C4 |
H26 |
1.100 |
1.089 |
C |
H27 |
1.100 |
1.089 |
C |
H28 |
1.100 |
1.091 |
C |
H29 |
1.101 |
1.090 |
Bond Angles for F0Y
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
N |
C23 |
H16 |
109.1 |
109.6 |
N |
C23 |
H17 |
109.1 |
109.6 |
C23 |
C22 |
C4 |
110.9 |
109.3 |
C23 |
C22 |
H14 |
109.1 |
109.5 |
C23 |
C22 |
H15 |
109.1 |
109.5 |
N |
C2 |
H1 |
109.2 |
109.6 |
N |
C2 |
H2 |
109.2 |
109.7 |
C22 |
C4 |
C5 |
112.2 |
109.4 |
C4 |
C22 |
H14 |
109.1 |
109.5 |
C4 |
C22 |
H15 |
109.1 |
109.5 |
C22 |
C4 |
H26 |
107.8 |
109.5 |
C3 |
C2 |
H1 |
109.2 |
109.6 |
C3 |
C2 |
H2 |
109.2 |
109.6 |
C2 |
C3 |
H3 |
108.9 |
109.5 |
C2 |
C3 |
H4 |
108.9 |
109.5 |
C4 |
C3 |
H3 |
108.9 |
109.5 |
C4 |
C3 |
H4 |
108.9 |
109.5 |
C4 |
C5 |
H24 |
108.4 |
109.5 |
C4 |
C5 |
H25 |
108.4 |
109.5 |
C18 |
C17 |
H9 |
121.2 |
120.9 |
C18 |
C19 |
N4 |
121.7 |
121.3 |
C19 |
C18 |
H10 |
120.1 |
120.2 |
C20 |
C19 |
N4 |
116.6 |
119.3 |
C17 |
C16 |
C21 |
119.6 |
118.9 |
C17 |
C16 |
N3 |
134.5 |
133.7 |
C19 |
N4 |
C21 |
118.0 |
121.6 |
C6 |
C7 |
H23 |
119.7 |
120.0 |
C7 |
C8 |
H22 |
120.0 |
120.0 |
C6 |
C11 |
H5 |
119.1 |
120.0 |
C8 |
C9 |
H21 |
119.8 |
120.0 |
C21 |
C16 |
N3 |
105.9 |
107.3 |
C16 |
C21 |
N5 |
109.0 |
106.0 |
C21 |
N5 |
H19 |
126.5 |
126.3 |
C11 |
C10 |
C12 |
120.7 |
120.0 |
C10 |
C11 |
H5 |
119.1 |
119.9 |
C10 |
C12 |
H6 |
107.5 |
109.5 |
C12 |
N2 |
C15 |
126.8 |
120.0 |
C15 |
N2 |
H18 |
105.0 |
120.0 |
C13 |
C12 |
N2 |
108.2 |
109.5 |
N2 |
C12 |
H6 |
108.2 |
109.5 |
C12 |
N2 |
H18 |
105.0 |
120.0 |
C12 |
C13 |
C14 |
110.6 |
109.5 |
C13 |
C12 |
H6 |
107.0 |
109.4 |
C12 |
C13 |
H7 |
109.2 |
109.5 |
C12 |
C13 |
H8 |
109.2 |
109.4 |
C13 |
C14 |
N1 |
177.8 |
180.0 |
C14 |
C13 |
H7 |
109.2 |
109.5 |
C14 |
C13 |
H8 |
109.2 |
109.4 |
H1 |
C2 |
H2 |
109.5 |
109.6 |
H3 |
C3 |
H4 |
109.5 |
109.5 |
H7 |
C13 |
H8 |
109.5 |
109.5 |
H11 |
C20 |
H12 |
109.5 |
109.5 |
H11 |
C20 |
H13 |
109.4 |
109.5 |
H12 |
C20 |
H13 |
109.5 |
109.5 |
H14 |
C22 |
H15 |
109.5 |
109.5 |
H16 |
C23 |
H17 |
109.5 |
109.7 |
H24 |
C5 |
H25 |
109.5 |
109.4 |
H27 |
C |
H28 |
109.4 |
109.5 |
H27 |
C |
H29 |
109.5 |
109.4 |
H28 |
C |
H29 |
109.5 |
109.4 |
Torsion Angles for F0Y
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
N |
C23 |
C22 |
C4 |
55.3 |
54.6 |
N |
C23 |
C22 |
H14 |
175.5 |
174.6 |
N |
C23 |
C22 |
H15 |
295.1 |
294.7 |
C23 |
N |
C2 |
H1 |
175.5 |
293.8 |
C23 |
N |
C2 |
H2 |
295.2 |
173.5 |
H16 |
C23 |
N |
H17 |
240.5 |
120.4 |
C23 |
C22 |
C4 |
C5 |
179.6 |
178.7 |
C4 |
C22 |
C23 |
H14 |
239.8 |
240.1 |
C4 |
C22 |
C23 |
H15 |
120.2 |
119.9 |
C23 |
C22 |
C4 |
H26 |
61.2 |
58.7 |
H14 |
C22 |
C23 |
H15 |
240.4 |
239.9 |
C3 |
C2 |
N |
H1 |
239.8 |
119.8 |
C3 |
C2 |
N |
H2 |
120.2 |
240.1 |
N |
C2 |
C3 |
H3 |
65.0 |
65.3 |
N |
C2 |
C3 |
H4 |
184.3 |
185.4 |
H1 |
C2 |
N |
H2 |
240.3 |
120.4 |
C23 |
C22 |
C4 |
H14 |
120.2 |
120.0 |
C23 |
C22 |
C4 |
H15 |
239.8 |
240.0 |
C22 |
C4 |
C3 |
H3 |
295.6 |
301.4 |
C22 |
C4 |
C3 |
H4 |
176.3 |
181.3 |
C22 |
C4 |
C5 |
H24 |
307.1 |
65.0 |
C22 |
C4 |
C5 |
H25 |
65.8 |
305.0 |
H14 |
C22 |
C4 |
H15 |
119.6 |
120.1 |
N |
C2 |
C3 |
H1 |
120.2 |
240.2 |
N |
C2 |
C3 |
H2 |
239.8 |
119.9 |
C4 |
C3 |
C2 |
H3 |
239.7 |
240.1 |
C4 |
C3 |
C2 |
H4 |
120.3 |
119.9 |
H1 |
C2 |
C3 |
H2 |
119.7 |
239.7 |
H3 |
C3 |
C2 |
H4 |
240.7 |
239.9 |
C4 |
C3 |
C2 |
H1 |
184.5 |
65.1 |
C4 |
C3 |
C2 |
H2 |
64.8 |
185.4 |
C2 |
C3 |
C4 |
H3 |
120.4 |
120.0 |
C2 |
C3 |
C4 |
H4 |
239.6 |
240.1 |
H3 |
C3 |
C4 |
H4 |
119.3 |
120.1 |
C5 |
C4 |
C22 |
H14 |
59.4 |
58.7 |
C5 |
C4 |
C22 |
H15 |
299.8 |
298.6 |
C22 |
C4 |
C5 |
H26 |
241.6 |
240.0 |
C5 |
C4 |
C3 |
H3 |
60.6 |
61.4 |
C5 |
C4 |
C3 |
H4 |
301.3 |
301.3 |
H24 |
C5 |
C4 |
H25 |
241.3 |
120.0 |
C18 |
C17 |
C16 |
C21 |
359.1 |
359.9 |
C18 |
C17 |
C16 |
N3 |
181.0 |
180.0 |
C19 |
C18 |
C17 |
H9 |
180.6 |
180.0 |
C20 |
C19 |
C18 |
N4 |
179.2 |
180.0 |
C18 |
C19 |
N4 |
C21 |
0.6 |
360.0 |
C18 |
C19 |
C20 |
N4 |
180.7 |
180.0 |
C20 |
C19 |
C18 |
H10 |
358.8 |
0.1 |
C20 |
C19 |
N4 |
C21 |
181.3 |
180.0 |
C21 |
C16 |
C17 |
N3 |
178.1 |
179.9 |
C17 |
C16 |
C21 |
N5 |
182.0 |
180.0 |
C22 |
C4 |
C5 |
C6 |
186.4 |
185.0 |
C5 |
C6 |
C7 |
H23 |
4.9 |
359.4 |
C5 |
C6 |
C11 |
H5 |
354.5 |
0.2 |
N4 |
C19 |
C18 |
H10 |
179.6 |
180.1 |
C6 |
C7 |
C8 |
H22 |
180.1 |
179.7 |
C7 |
C6 |
C11 |
H5 |
178.7 |
179.7 |
C7 |
C8 |
C9 |
H21 |
179.9 |
180.0 |
C10 |
C11 |
C6 |
H5 |
180.0 |
179.8 |
C17 |
C16 |
C21 |
N3 |
181.4 |
180.1 |
C19 |
N4 |
C21 |
C16 |
359.1 |
360.0 |
C16 |
C21 |
N5 |
H19 |
179.5 |
179.8 |
C17 |
C16 |
N3 |
C21 |
178.3 |
179.9 |
N3 |
C16 |
C21 |
N5 |
0.6 |
359.9 |
N4 |
C21 |
C16 |
N3 |
179.7 |
180.0 |
N4 |
C21 |
N5 |
H19 |
0.5 |
359.8 |
C19 |
N4 |
C21 |
N5 |
178.0 |
180.1 |
N5 |
C21 |
C16 |
N3 |
0.6 |
359.9 |
N3 |
C15 |
N2 |
H18 |
138.5 |
359.7 |
C6 |
C11 |
C10 |
H5 |
180.0 |
180.2 |
C11 |
C10 |
C12 |
H6 |
159.0 |
340.0 |
C9 |
C10 |
C11 |
H5 |
181.3 |
180.0 |
C9 |
C10 |
C12 |
H6 |
339.9 |
160.0 |
C12 |
C10 |
C11 |
H5 |
2.2 |
0.0 |
N2 |
C12 |
C10 |
H6 |
240.0 |
240.0 |
C10 |
C12 |
N2 |
H18 |
285.7 |
335.0 |
C13 |
C12 |
C10 |
H6 |
117.0 |
119.9 |
C10 |
C12 |
C13 |
H7 |
61.8 |
305.1 |
C10 |
C12 |
C13 |
H8 |
181.5 |
65.1 |
N5 |
C15 |
N2 |
H18 |
318.8 |
179.9 |
C13 |
C12 |
N2 |
C15 |
172.8 |
275.0 |
C15 |
N2 |
C12 |
H6 |
288.4 |
35.0 |
C12 |
N2 |
C15 |
H18 |
237.7 |
180.0 |
C11 |
C10 |
C12 |
N2 |
39.0 |
220.0 |
C10 |
C12 |
N2 |
H6 |
119.6 |
120.0 |
C15 |
N2 |
C12 |
H18 |
122.3 |
180.0 |
N2 |
C12 |
C13 |
C14 |
175.3 |
64.9 |
C13 |
C12 |
N2 |
H6 |
244.4 |
240.0 |
N2 |
C12 |
C13 |
H7 |
295.5 |
185.0 |
N2 |
C12 |
C13 |
H8 |
55.2 |
305.0 |
C11 |
C10 |
C12 |
C13 |
276.0 |
99.9 |
C10 |
C12 |
C13 |
H6 |
242.7 |
240.1 |
N2 |
C12 |
C13 |
H6 |
116.3 |
120.0 |
C13 |
C12 |
N2 |
H18 |
50.5 |
95.1 |
C12 |
C13 |
C14 |
N1 |
43.6 |
251.5 |
C14 |
C13 |
C12 |
H7 |
239.8 |
240.0 |
C14 |
C13 |
C12 |
H8 |
120.2 |
119.9 |
H7 |
C13 |
C12 |
H8 |
240.3 |
240.0 |
C14 |
C13 |
C12 |
N2 |
175.3 |
64.9 |
C14 |
C13 |
C12 |
H6 |
59.0 |
305.0 |
C12 |
C13 |
C14 |
H7 |
120.2 |
120.1 |
C12 |
C13 |
C14 |
H8 |
239.8 |
240.1 |
H7 |
C13 |
C14 |
H8 |
119.7 |
120.0 |
N1 |
C14 |
C13 |
H7 |
283.4 |
131.4 |
N1 |
C14 |
C13 |
H8 |
163.8 |
11.4 |
N |
C2 |
H1 |
H2 |
119.5 |
239.6 |
C3 |
C2 |
H1 |
H2 |
240.5 |
120.3 |
H1 |
C2 |
C3 |
H3 |
304.8 |
185.1 |
H1 |
C2 |
C3 |
H4 |
64.1 |
305.2 |
N |
C2 |
H2 |
H1 |
240.5 |
120.3 |
C3 |
C2 |
H2 |
H1 |
119.5 |
239.7 |
H2 |
C2 |
C3 |
H3 |
185.1 |
305.3 |
H2 |
C2 |
C3 |
H4 |
304.5 |
65.5 |
H3 |
C3 |
C2 |
H1 |
304.8 |
185.1 |
H3 |
C3 |
C2 |
H2 |
185.1 |
305.3 |
C2 |
C3 |
H3 |
H4 |
119.0 |
120.1 |
C4 |
C3 |
H3 |
H4 |
241.1 |
239.9 |
H4 |
C3 |
C2 |
H1 |
64.1 |
305.2 |
H4 |
C3 |
C2 |
H2 |
304.5 |
65.5 |
C2 |
C3 |
H4 |
H3 |
241.0 |
239.9 |
C4 |
C3 |
H4 |
H3 |
118.9 |
120.0 |
H5 |
C11 |
C10 |
C12 |
2.2 |
0.0 |
H6 |
C12 |
N2 |
C15 |
288.4 |
35.0 |
C13 |
C12 |
H6 |
N2 |
116.3 |
120.0 |
H6 |
C12 |
N2 |
H18 |
166.1 |
215.0 |
H6 |
C12 |
C13 |
C14 |
59.0 |
305.0 |
H6 |
C12 |
C13 |
H7 |
179.2 |
65.0 |
H6 |
C12 |
C13 |
H8 |
298.8 |
185.0 |
H7 |
C13 |
C12 |
N2 |
295.5 |
185.0 |
C12 |
C13 |
H7 |
C14 |
239.0 |
240.0 |
H7 |
C13 |
C12 |
H6 |
179.2 |
65.0 |
C12 |
C13 |
H7 |
H8 |
119.5 |
120.0 |
H7 |
C13 |
C14 |
N1 |
283.4 |
131.4 |
C14 |
C13 |
H7 |
H8 |
240.5 |
240.0 |
H8 |
C13 |
C12 |
N2 |
55.2 |
305.0 |
C12 |
C13 |
H8 |
C14 |
121.0 |
120.0 |
H8 |
C13 |
C12 |
H6 |
298.8 |
185.0 |
C12 |
C13 |
H8 |
H7 |
240.5 |
239.9 |
H8 |
C13 |
C14 |
N1 |
163.8 |
11.4 |
C14 |
C13 |
H8 |
H7 |
119.5 |
120.0 |
H9 |
C17 |
C16 |
C21 |
179.1 |
180.0 |
H9 |
C17 |
C16 |
N3 |
1.0 |
0.1 |
H10 |
C18 |
C17 |
H9 |
0.6 |
359.9 |
H10 |
C18 |
C19 |
N4 |
179.6 |
180.1 |
H11 |
C20 |
C19 |
N4 |
360.0 |
270.0 |
H12 |
C20 |
H11 |
H13 |
120.0 |
120.1 |
H12 |
C20 |
C19 |
N4 |
120.0 |
30.0 |
H11 |
C20 |
H12 |
H13 |
240.1 |
239.9 |
H13 |
C20 |
C19 |
N4 |
240.0 |
150.0 |
H11 |
C20 |
H13 |
H12 |
120.0 |
120.1 |
C23 |
C22 |
H14 |
C4 |
238.7 |
240.2 |
C23 |
C22 |
H14 |
H15 |
119.4 |
120.1 |
H14 |
C22 |
C4 |
C5 |
59.4 |
58.7 |
C4 |
C22 |
H14 |
H15 |
240.6 |
240.0 |
H14 |
C22 |
C4 |
H26 |
301.0 |
298.7 |
C23 |
C22 |
H15 |
C4 |
121.3 |
119.8 |
C23 |
C22 |
H15 |
H14 |
240.6 |
239.9 |
H15 |
C22 |
C4 |
C5 |
299.8 |
298.6 |
C4 |
C22 |
H15 |
H14 |
119.4 |
120.1 |
H15 |
C22 |
C4 |
H26 |
181.4 |
178.6 |
N |
C23 |
H16 |
H17 |
119.3 |
239.6 |
H16 |
C23 |
C22 |
C4 |
295.0 |
174.4 |
H16 |
C23 |
C22 |
H14 |
55.3 |
294.4 |
H16 |
C23 |
C22 |
H15 |
174.9 |
54.5 |
N |
C23 |
H17 |
H16 |
240.7 |
120.4 |
H17 |
C23 |
C22 |
C4 |
175.5 |
294.8 |
H17 |
C23 |
C22 |
H14 |
295.8 |
54.8 |
H17 |
C23 |
C22 |
H15 |
55.4 |
174.9 |
C12 |
N2 |
H18 |
C15 |
135.5 |
180.0 |
H18 |
N2 |
C12 |
H6 |
166.1 |
215.0 |
H22 |
C8 |
C9 |
H21 |
359.9 |
360.0 |
H23 |
C7 |
C8 |
H22 |
0.1 |
0.4 |
C4 |
C5 |
H24 |
H25 |
118.0 |
240.0 |
C4 |
C5 |
H25 |
H24 |
242.0 |
120.1 |
C22 |
C4 |
H26 |
C5 |
121.2 |
120.0 |
H26 |
C4 |
C22 |
H14 |
301.0 |
298.7 |
H26 |
C4 |
C22 |
H15 |
181.4 |
178.6 |
H26 |
C4 |
C3 |
H3 |
178.9 |
181.4 |
H26 |
C4 |
C3 |
H4 |
59.6 |
61.3 |
H26 |
C4 |
C5 |
H24 |
65.5 |
185.0 |
H26 |
C4 |
C5 |
H25 |
184.2 |
65.0 |
H28 |
C |
H27 |
H29 |
120.0 |
119.9 |
H27 |
C |
H28 |
H29 |
240.0 |
240.1 |
H27 |
C |
H29 |
H28 |
120.0 |
120.0 |