PDB Chemical Component F01

Ideal Model

Chemical Description

Name 4-amino-1-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-5-fluoro-pyrimidin-2-one
Synonyms 4-amino-5-fluoro-1-((2R,3S,4R,5R)-tetrahydro-3,4-dihydroxy-5-(hydroxymethyl)furan-2-yl)pyrimidin-2(1H)-one
Formula C9 H12 F N3 O5
Formal charge 0
Molecular weight 261.207 g/mol
Component type NON-POLYMER

Chemical features

Atom count 30
Chiral atom count 4
Chiral atoms C1 C4 C3 C2
Bond count 31
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 5-fluorocytidine
Systematic name (OpenEye OEToolkits) 4-amino-1-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-5-fluoro-pyrimidin-2-one

Chemical Descriptors

Stereo SMILES (CACTVS) NC1=NC(=O)N(C=C1F)[C@@H]2O[C@H](CO)[C@@H](O)[C@H]2O
SMILES (CACTVS) NC1=NC(=O)N(C=C1F)[CH]2O[CH](CO)[CH](O)[CH]2O
Stereo SMILES (OpenEye) C1=C(C(=NC(=O)N1[C@H]2[C@@H]([C@@H]([C@H](O2)CO)O)O)N)F
InChI descriptor InChI=1S/C9H12FN3O5/c10-3-1-13(9(17)12-7(3)11)8-6(16)5(15)4(2-14)18-8/h1,4-6,8,14-16H,2H2,(H2,11,12,17)/t4-,5-,6-,8-/m1/s1
InChIKey descriptor STRZQWQNZQMHQR-UAKXSSHOSA-N

Status Information

Last modified 2020-06-17
Created 2008-09-29
Release status REL
Model PDB code 3ELC
Processing site PDBJ