PDB Chemical Component EY4

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for EY4

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C2 C3 1.522 1.530
C2 C1 1.530 1.530
C3 C4 1.523 1.531
C3 O3 1.427 1.428
C4 C5 1.539 1.531
C1 C10 1.564 1.530
C19 C10 1.554 1.529
C5 C10 1.571 1.532
C5 C6 1.527 1.528
C10 C9 1.570 1.526
C6 C7 1.531 1.532
O11 C11 1.232 1.208
C9 C11 1.540 1.507
C9 C8 1.566 1.538
C11 C12 1.523 1.523
C7 C8 1.533 1.527
C8 C14 1.531 1.514
C18 C13 1.552 1.530
C12 C13 1.531 1.519
C14 C13 1.537 1.554
C14 C15 1.533 1.534
C13 C17 1.547 1.527
C15 C16 1.540 1.552
C17 C16 1.547 1.548
C17 C20 1.502 1.507
C20 O20 1.230 1.207
C20 C21 1.503 1.507
C12 H1 1.099 1.089
C12 H2 1.100 1.090
C14 H3 1.100 1.089
C15 H4 1.100 1.090
C15 H5 1.100 1.090
C1 H6 1.100 1.091
C1 H7 1.100 1.089
C16 H8 1.100 1.090
C16 H9 1.100 1.090
C17 H10 1.100 1.090
C18 H11 1.100 1.091
C18 H12 1.100 1.089
C18 H13 1.100 1.090
C19 H14 1.101 1.091
C19 H15 1.100 1.090
C19 H16 1.099 1.090
C2 H17 1.100 1.089
C2 H18 1.100 1.090
C21 H19 1.100 1.091
C21 H20 1.100 1.090
C21 H21 1.100 1.090
C3 H22 1.100 1.090
C4 H23 1.100 1.089
C4 H24 1.100 1.090
C5 H25 1.100 1.090
C6 H26 1.100 1.090
C6 H27 1.100 1.091
C7 H28 1.099 1.090
C7 H29 1.100 1.090
C8 H30 1.100 1.090
C9 H31 1.100 1.090
O3 H32 0.950 0.967

Bond Angles for EY4

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 C3 C4 109.0 109.5
C2 C3 O3 107.4 109.5
C3 C2 H17 109.3 109.5
C3 C2 H18 109.3 109.4
C2 C3 H22 110.7 109.4
C2 C1 H6 108.1 109.4
C2 C1 H7 108.1 109.5
C4 C3 O3 106.8 109.5
C3 C4 C5 106.6 109.5
C4 C3 H22 110.7 109.4
C3 C4 H23 110.2 109.5
C3 C4 H24 110.2 109.5
O3 C3 H22 112.1 109.5
C3 O3 H32 109.5 114.0
C4 C5 C6 112.0 109.6
C5 C4 H23 110.2 109.4
C5 C4 H24 110.2 109.4
C4 C5 H25 106.2 109.3
C1 C10 C9 111.0 109.8
C19 C10 C9 111.7 109.5
C5 C10 C9 104.3 108.9
C5 C6 C7 110.0 110.0
C6 C5 H25 106.3 109.1
C5 C6 H26 109.4 109.4
C5 C6 H27 109.3 109.4
C10 C9 C11 117.5 111.1
C10 C9 C8 111.6 108.8
C10 C9 H31 105.3 109.2
C6 C7 C8 112.9 108.9
C7 C6 H26 109.3 109.4
C7 C6 H27 109.3 109.3
C6 C7 H28 108.6 109.6
C6 C7 H29 108.6 109.6
C9 C8 H30 107.8 109.7
C11 C12 C13 108.8 106.6
C11 C12 H1 109.6 110.0
C11 C12 H2 109.6 110.0
C8 C7 H28 108.6 109.5
C8 C7 H29 108.6 109.6
C7 C8 H30 108.1 109.5
C8 C14 H3 107.4 111.0
C12 C13 C17 115.2 115.6
C13 C12 H1 109.7 110.0
C13 C12 H2 109.7 110.0
C14 C13 C17 101.1 103.4
C14 C15 C16 104.5 103.1
C15 C14 H3 107.4 110.4
C14 C15 H4 110.7 110.7
C14 C15 H5 110.7 110.7
C13 C17 C16 105.0 105.5
C13 C17 C20 115.8 110.3
C13 C17 H10 107.9 110.2
C16 C15 H4 110.7 110.7
C16 C15 H5 110.7 110.6
C15 C16 H8 110.2 110.1
C15 C16 H9 110.2 110.1
C17 C16 H8 110.1 110.0
C17 C16 H9 110.2 110.1
C17 C20 O20 121.1 120.0
C17 C20 C21 115.8 120.0
C20 C17 H10 108.5 110.3
C21 C20 O20 119.9 120.0
C20 C21 H19 109.5 109.5
C20 C21 H20 109.5 109.5
C20 C21 H21 109.5 109.5
H1 C12 H2 109.4 110.2
H4 C15 H5 109.5 110.8
H6 C1 H7 109.5 109.5
H8 C16 H9 109.5 110.0
H11 C18 H12 109.4 109.5
H11 C18 H13 109.5 109.4
H12 C18 H13 109.5 109.5
H14 C19 H15 109.4 109.4
H14 C19 H16 109.4 109.5
H15 C19 H16 109.5 109.5
H17 C2 H18 109.4 109.5
H19 C21 H20 109.5 109.5
H19 C21 H21 109.5 109.4
H20 C21 H21 109.5 109.5
H23 C4 H24 109.4 109.5
H26 C6 H27 109.5 109.3
H28 C7 H29 109.5 109.6

Torsion Angles for EY4

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C3 C2 C1 H6 68.2 180.0
C3 C2 C1 H7 186.6 60.0
C4 C3 C2 O3 115.4 120.0
C2 C3 C4 C5 293.4 300.0
C4 C3 C2 H22 238.0 240.0
C2 C3 C4 H23 52.9 60.0
C2 C3 C4 H24 173.8 180.0
O3 C3 C2 H22 122.7 120.0
C2 C3 O3 H32 180.0 300.0
H17 C2 C3 H18 240.2 120.1
C2 C1 C10 C9 158.7 179.7
H6 C1 C2 H7 241.6 120.0
C2 C3 C4 O3 244.2 239.9
C4 C3 C2 H17 183.7 299.9
C4 C3 C2 H18 303.5 179.8
C2 C3 C4 H22 121.9 120.0
O3 C3 C4 H22 237.7 240.0
C4 C3 O3 H32 63.2 179.9
C3 C4 C5 C6 188.6 180.8
C5 C4 C3 H23 240.4 240.0
C5 C4 C3 H24 119.6 120.0
C3 C4 C5 H25 304.3 300.3
H23 C4 C3 H24 239.1 239.9
C2 C3 O3 C4 116.8 120.1
O3 C3 C2 H17 68.3 179.9
O3 C3 C2 H18 188.1 59.8
C2 C3 O3 H22 238.2 240.0
O3 C3 C4 C5 49.1 60.1
C4 C3 O3 H22 121.4 119.9
O3 C3 C4 H23 168.7 180.0
O3 C3 C4 H24 289.6 300.1
C5 C4 C3 O3 49.1 60.1
C5 C4 C3 H22 171.4 180.0
C3 C4 C5 H23 119.6 120.0
C3 C4 C5 H24 240.4 240.0
C4 C5 C10 C9 192.5 179.8
C4 C5 C6 C7 168.9 181.2
C6 C5 C4 H25 244.3 240.4
C4 C5 C6 H26 288.9 301.4
C4 C5 C6 H27 48.8 61.1
H23 C4 C5 H24 120.9 120.0
C19 C10 C1 C9 123.7 120.3
C5 C10 C1 C9 245.4 240.6
C1 C10 C9 C11 54.2 57.5
C1 C10 C9 C8 183.2 178.8
C1 C10 C9 H31 297.0 297.0
C1 C10 C19 C9 236.7 239.5
C5 C10 C19 C9 115.9 119.5
C19 C10 C9 C11 291.8 297.1
C19 C10 C9 C8 60.8 58.5
C19 C10 C9 H31 174.7 176.6
C1 C10 C5 C9 118.8 119.9
C19 C10 C5 C9 239.6 240.1
C5 C10 C9 C11 171.9 177.2
C5 C10 C9 C8 300.9 298.5
C5 C10 C9 H31 54.8 56.7
C6 C5 C4 H23 69.0 60.8
C6 C5 C4 H24 308.1 300.8
C4 C5 C6 H25 115.6 119.7
C6 C5 C10 C9 64.3 59.4
C5 C6 C7 C8 52.2 59.5
C7 C6 C5 H26 239.9 239.8
C7 C6 C5 H27 120.1 120.1
C5 C6 C7 H28 172.7 179.3
C5 C6 C7 H29 291.7 299.7
H26 C6 C5 H27 240.2 240.2
C10 C9 C8 H30 294.8 303.3
C7 C6 C5 H25 53.2 61.5
C5 C6 C7 H26 120.1 120.2
C5 C6 C7 H27 239.9 239.9
C8 C7 C6 H28 239.5 240.2
C8 C7 C6 H29 120.5 119.9
C6 C7 C8 H30 70.0 58.3
H26 C6 C7 H27 119.8 119.7
H28 C7 C6 H29 241.0 239.6
O11 C11 C12 H1 235.6 249.5
O11 C11 C12 H2 355.7 11.0
C10 C9 C11 C8 129.5 120.6
C10 C9 C11 H31 243.0 239.5
C9 C11 C12 H1 64.8 69.5
C9 C11 C12 H2 185.0 191.0
C10 C9 C8 C11 227.4 238.0
C10 C9 C8 H31 113.8 118.7
C9 C8 C7 H28 190.6 178.7
C9 C8 C7 H29 71.6 58.4
C7 C8 C9 H30 119.1 119.7
C9 C8 C14 H3 303.8 306.5
C10 C9 C11 C12 178.7 168.1
C11 C12 C13 C17 172.1 173.6
C13 C12 C11 H1 240.1 240.7
C13 C12 C11 H2 119.9 119.2
H1 C12 C11 H2 239.8 238.5
C10 C9 C8 C7 54.0 63.0
C8 C7 C6 H26 292.1 299.3
C8 C7 C6 H27 172.3 179.6
C6 C7 C8 H28 120.5 119.8
C6 C7 C8 H29 239.5 240.1
C9 C8 C7 H30 241.1 240.2
C7 C8 C14 H3 68.4 65.7
H28 C7 C8 H29 119.0 120.3
C10 C9 C8 C14 177.7 184.3
C15 C14 C8 H3 238.2 233.4
C8 C14 C15 H4 321.2 321.4
C8 C14 C15 H5 82.8 84.6
C18 C13 C12 H1 178.9 179.3
C18 C13 C12 H2 58.7 57.8
C18 C13 C17 C20 320.8 329.9
C18 C13 C17 H10 199.1 207.9
C11 C12 C13 H1 119.9 119.3
C11 C12 C13 H2 240.1 240.8
C14 C13 C12 C17 248.7 245.0
C12 C13 C17 C16 209.0 213.9
C12 C13 C17 C20 85.8 94.9
C12 C13 C17 H10 324.0 332.9
H1 C12 C13 H2 120.2 121.5
C12 C13 C14 C17 120.7 122.9
C14 C13 C12 H1 300.9 299.3
C14 C13 C12 H2 180.7 177.8
C14 C13 C17 C16 323.6 331.4
C14 C13 C17 C20 200.3 212.3
C14 C13 C17 H10 78.6 90.4
C8 C14 C15 H3 121.8 126.9
C15 C14 C13 C17 43.3 43.7
C16 C15 C14 H4 240.8 241.6
C16 C15 C14 H5 119.2 118.3
C14 C15 C16 H8 129.8 143.2
C14 C15 C16 H9 250.7 264.6
H4 C15 C14 H5 238.4 236.7
C17 C13 C12 H1 52.2 54.3
C17 C13 C12 H2 292.0 292.8
C13 C17 C16 H8 256.9 243.8
C13 C17 C16 H9 136.0 122.4
C13 C17 C20 O20 82.5 93.1
C13 C17 C20 C21 242.5 273.2
C20 C17 C13 H10 121.8 122.0
C16 C15 C14 H3 80.2 76.1
C14 C15 C16 H4 119.2 118.4
C14 C15 C16 H5 240.8 241.6
C13 C17 C16 C15 16.4 3.1
C17 C16 C15 H8 240.5 240.8
C17 C16 C15 H9 119.6 119.3
H4 C15 C16 H5 121.6 123.2
H8 C16 C15 H9 239.1 238.5
C13 C17 C16 C20 233.9 240.9
C13 C17 C16 H10 114.9 119.0
C17 C16 C15 H4 251.1 265.6
C17 C16 C15 H5 129.5 142.3
C15 C16 C17 H8 119.5 119.3
C15 C16 C17 H9 240.4 240.7
H8 C16 C17 H9 120.9 121.4
C13 C17 C20 C16 119.9 116.1
C13 C17 C20 H10 238.5 238.1
C20 C17 C16 H8 23.0 2.9
C20 C17 C16 H9 262.1 241.5
C21 C20 C17 O20 160.0 180.0
C17 C20 C21 H19 199.8 59.9
C17 C20 C21 H20 319.8 180.0
C17 C20 C21 H21 79.8 300.0
C17 C20 O20 C21 159.2 180.0
O20 C20 C17 H10 204.0 215.1
O20 C20 C21 H19 0.0 240.0
O20 C20 C21 H20 120.0 0.0
O20 C20 C21 H21 240.0 120.0
C17 C20 C21 O20 199.8 180.0
C21 C20 C17 H10 3.9 35.1
H19 C21 C20 H20 240.0 240.0
H19 C21 C20 H21 120.0 119.9
H20 C21 C20 H21 240.0 240.0
C11 C12 H1 C13 240.6 242.9
C11 C12 H1 H2 120.3 121.4
H1 C12 C13 C17 52.2 54.3
C13 C12 H1 H2 239.7 238.5
C11 C12 H2 C13 119.4 117.1
C11 C12 H2 H1 239.7 238.6
H2 C12 C13 C17 292.0 292.8
C13 C12 H2 H1 120.3 121.5
H3 C14 C13 C17 289.6 286.4
H3 C14 C15 C16 80.2 76.1
H3 C14 C15 H4 199.4 194.4
H3 C14 C15 H5 321.0 317.7
C14 C15 H4 C16 244.6 246.4
H4 C15 C14 H3 199.4 194.4
C14 C15 H4 H5 122.3 123.2
C16 C15 H4 H5 237.7 236.9
H4 C15 C16 H8 10.6 24.8
H4 C15 C16 H9 131.5 146.3
C14 C15 H5 C16 115.3 113.6
H5 C15 C14 H3 321.0 317.7
C14 C15 H5 H4 237.7 236.8
C16 C15 H5 H4 122.3 123.2
H5 C15 C16 H8 249.0 261.5
H5 C15 C16 H9 9.9 23.0
C2 C1 H6 H7 117.6 240.0
H6 C1 C10 C9 37.9 299.6
C2 C1 H7 H6 242.4 120.0
H7 C1 C10 C9 279.5 59.6
H8 C16 C15 H4 10.6 24.8
H8 C16 C15 H5 249.0 261.5
C15 C16 H8 H9 121.3 121.6
C17 C16 H8 H9 238.7 238.5
H9 C16 C15 H4 131.5 146.3
H9 C16 C15 H5 9.9 23.0
C15 C16 H9 H8 238.7 238.4
C17 C16 H9 H8 121.3 121.4
C13 C17 H10 C16 247.0 243.9
C13 C17 H10 C20 126.2 122.0
H10 C17 C16 H8 141.9 124.8
H10 C17 C16 H9 21.0 3.4
H10 C17 C20 O20 204.0 215.1
H10 C17 C20 C21 3.9 35.1
H12 C18 H11 H13 120.0 120.0
H11 C18 H12 H13 240.0 240.1
H11 C18 H13 H12 120.0 120.0
H14 C19 C10 C9 303.3 60.0
H15 C19 H14 H16 120.0 120.0
H15 C19 C10 C9 63.3 180.0
H14 C19 H15 H16 240.0 240.0
H16 C19 C10 C9 183.3 300.1
H14 C19 H16 H15 120.0 120.0
H17 C2 C3 C4 183.7 299.9
H17 C2 C3 O3 68.3 179.9
C3 C2 H17 H18 119.7 240.0
H17 C2 C3 H22 305.7 59.9
H17 C2 C1 H6 308.1 300.0
H17 C2 C1 H7 66.5 180.0
H18 C2 C3 C4 303.5 179.8
H18 C2 C3 O3 188.1 59.8
C3 C2 H18 H17 240.3 120.0
H18 C2 C3 H22 65.4 299.8
H18 C2 C1 H6 188.3 60.1
H18 C2 C1 H7 306.7 300.1
H19 C21 C20 O20 0.0 240.0
C20 C21 H19 H20 120.0 120.1
C20 C21 H19 H21 240.0 240.0
H20 C21 H19 H21 120.0 120.0
H20 C21 C20 O20 120.0 0.0
C20 C21 H20 H19 240.0 240.0
C20 C21 H20 H21 120.0 120.0
H19 C21 H20 H21 240.0 240.1
H21 C21 C20 O20 240.0 120.0
C20 C21 H21 H19 120.0 120.0
C20 C21 H21 H20 240.0 240.0
H19 C21 H21 H20 120.0 120.0
C2 C3 H22 C4 239.1 240.0
C2 C3 H22 O3 119.9 120.0
H22 C3 C2 H17 305.7 59.9
H22 C3 C2 H18 65.4 299.8
C4 C3 H22 O3 240.8 240.0
H22 C3 C4 C5 171.4 180.0
H22 C3 C4 H23 291.0 300.0
H22 C3 C4 H24 51.9 60.1
H22 C3 O3 H32 301.8 59.9
H23 C4 C3 O3 168.7 180.0
C3 C4 H23 C5 242.6 240.0
H23 C4 C3 H22 291.0 300.0
C3 C4 H23 H24 121.3 120.1
H23 C4 C5 C6 69.0 60.8
C5 C4 H23 H24 238.7 240.0
H23 C4 C5 H25 184.7 180.3
H24 C4 C3 O3 289.6 300.1
C3 C4 H24 C5 117.4 120.0
H24 C4 C3 H22 51.9 60.1
C3 C4 H24 H23 238.7 239.9
H24 C4 C5 C6 308.1 300.8
C5 C4 H24 H23 121.3 120.0
H24 C4 C5 H25 63.8 60.3
C4 C5 H25 C6 240.6 240.2
H25 C5 C4 H23 184.7 180.3
H25 C5 C4 H24 63.8 60.3
H25 C5 C10 C9 308.9 299.5
H25 C5 C6 C7 53.2 61.5
H25 C5 C6 H26 173.3 181.7
H25 C5 C6 H27 293.1 301.4
C5 C6 H26 C7 239.5 239.5
H26 C6 C5 H25 173.3 181.7
C5 C6 H26 H27 119.7 119.8
H26 C6 C7 C8 292.1 299.3
C7 C6 H26 H27 240.3 240.3
H26 C6 C7 H28 52.6 59.1
H26 C6 C7 H29 171.6 179.5
C5 C6 H27 C7 120.5 120.5
H27 C6 C5 H25 293.1 301.4
C5 C6 H27 H26 240.2 240.2
H27 C6 C7 C8 172.3 179.6
C7 C6 H27 H26 119.7 119.7
H27 C6 C7 H28 292.8 299.4
H27 C6 C7 H29 51.7 59.8
C6 C7 H28 C8 236.9 240.6
H28 C7 C6 H26 52.6 59.1
H28 C7 C6 H27 292.8 299.4
C6 C7 H28 H29 118.4 120.3
C8 C7 H28 H29 241.6 239.7
H28 C7 C8 H30 309.5 298.5
C6 C7 H29 C8 123.2 119.5
H29 C7 C6 H26 171.6 179.5
H29 C7 C6 H27 51.7 59.8
C6 C7 H29 H28 241.6 239.7
C8 C7 H29 H28 118.4 120.2
H29 C7 C8 H30 190.6 178.2
H30 C8 C7 H28 309.5 298.5
H30 C8 C7 H29 190.6 178.2
H30 C8 C14 H3 187.0 187.4
C10 C9 H31 C11 125.0 121.7
C10 C9 H31 C8 241.9 241.6
H31 C9 C8 H30 181.0 184.6
H32 O3 C3 H22 301.8 59.9