PDB Chemical Component EXI

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for EXI

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N01 C02 1.365 1.324
N01 C06 1.374 1.320
C02 N02 1.358 1.390
C02 C03 1.291 1.392
C03 C04 1.281 1.383
C04 C05 1.400 1.388
C04 C07 1.510 1.507
C05 C06 1.422 1.380
C06 C08 1.528 1.506
C08 C09 1.537 1.530
C09 C13 1.535 1.507
N11 C12 1.354 1.319
N11 C16 1.346 1.318
C12 C13 1.404 1.383
C13 C14 1.401 1.386
C14 C15 1.402 1.393
C15 C16 1.400 1.389
C15 N17 1.413 1.397
C17 N17 1.481 1.464
N17 C18 1.471 1.465
C18 C19 1.533 1.530
C19 N20 1.495 1.469
N20 C21 1.478 1.470
N02 HN02 1.000 0.971
N02 HN0A 1.000 0.970
C03 H03 1.081 1.080
C05 H05 1.080 1.080
C07 H07 1.100 1.090
C07 H07A 1.100 1.090
C07 H07B 1.100 1.091
C08 H08 1.100 1.090
C08 H08A 1.100 1.090
C09 H09 1.100 1.090
C09 H09A 1.100 1.090
C12 H12 1.080 1.080
C14 H14 1.080 1.080
C16 H16 1.080 1.079
C17 H17 1.100 1.090
C17 H17A 1.100 1.090
C17 H17B 1.100 1.090
C18 H18 1.100 1.090
C18 H18A 1.100 1.090
C19 H19 1.100 1.089
C19 H19A 1.100 1.090
N20 HN20 1.000 1.009
C21 H21 1.100 1.090
C21 H21A 1.100 1.090
C21 H21B 1.100 1.090

Bond Angles for EXI

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C02 N01 C06 119.3 121.6
N01 C02 N02 120.9 119.7
N01 C02 C03 107.8 120.6
N01 C06 C05 122.7 120.8
N01 C06 C08 117.2 119.6
N02 C02 C03 131.3 119.7
C02 N02 HN02 109.5 120.0
C02 N02 HN0A 109.5 120.0
C02 C03 C04 145.5 119.1
C02 C03 H03 107.3 120.5
C03 C04 C05 106.5 118.6
C03 C04 C07 131.4 120.7
C04 C03 H03 107.2 120.5
C05 C04 C07 122.0 120.7
C04 C05 C06 118.0 119.3
C04 C05 H05 121.0 120.4
C04 C07 H07 109.5 109.5
C04 C07 H07A 109.5 109.5
C04 C07 H07B 109.5 109.5
C05 C06 C08 120.0 119.6
C06 C05 H05 121.0 120.3
C06 C08 C09 107.6 109.5
C06 C08 H08 109.9 109.5
C06 C08 H08A 109.9 109.5
C08 C09 C13 110.1 109.5
C09 C08 H08 109.9 109.4
C09 C08 H08A 110.0 109.5
C08 C09 H09 109.3 109.4
C08 C09 H09A 109.3 109.4
C09 C13 C12 120.8 120.4
C09 C13 C14 120.5 120.3
C13 C09 H09 109.3 109.5
C13 C09 H09A 109.3 109.5
C12 N11 C16 120.5 121.8
N11 C12 C13 121.4 120.9
N11 C12 H12 119.3 119.6
N11 C16 C15 120.8 120.7
N11 C16 H16 119.6 119.7
C12 C13 C14 118.7 119.3
C13 C12 H12 119.3 119.6
C13 C14 C15 118.8 118.3
C13 C14 H14 120.6 120.9
C14 C15 C16 119.6 119.0
C14 C15 N17 120.1 120.5
C15 C14 H14 120.6 120.8
C16 C15 N17 120.2 120.5
C15 C16 H16 119.6 119.6
C15 N17 C17 121.1 120.0
C15 N17 C18 119.1 120.0
C17 N17 C18 119.8 120.0
N17 C17 H17 109.5 109.5
N17 C17 H17A 109.5 109.5
N17 C17 H17B 109.5 109.4
N17 C18 C19 108.2 109.4
N17 C18 H18 109.8 109.5
N17 C18 H18A 109.8 109.5
C18 C19 N20 112.7 109.5
C19 C18 H18 109.8 109.5
C19 C18 H18A 109.8 109.5
C18 C19 H19 108.6 109.5
C18 C19 H19A 108.7 109.5
C19 N20 C21 114.0 111.0
N20 C19 H19 108.7 109.5
N20 C19 H19A 108.7 109.5
C19 N20 HN20 108.3 111.0
C21 N20 HN20 108.3 111.0
N20 C21 H21 109.5 109.4
N20 C21 H21A 109.5 109.4
N20 C21 H21B 109.5 109.5
HN02 N02 HN0A 109.5 120.0
H07 C07 H07A 109.5 109.5
H07 C07 H07B 109.5 109.4
H07A C07 H07B 109.5 109.4
H08 C08 H08A 109.5 109.5
H09 C09 H09A 109.5 109.5
H17 C17 H17A 109.5 109.5
H17 C17 H17B 109.5 109.4
H17A C17 H17B 109.4 109.4
H18 C18 H18A 109.5 109.5
H19 C19 H19A 109.5 109.4
H21 C21 H21A 109.4 109.5
H21 C21 H21B 109.5 109.5
H21A C21 H21B 109.5 109.5

Torsion Angles for EXI

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C02 N01 C06 C05 358.8 0.1
C02 N01 C06 C08 179.2 180.0
N02 C02 N01 C03 181.3 180.1
N01 C02 N02 HN02 360.0 359.9
N01 C02 N02 HN0A 120.0 180.0
N01 C02 C03 C04 1.5 0.0
N01 C02 C03 H03 181.4 180.0
C06 N01 C02 N02 181.3 180.0
C06 N01 C02 C03 360.0 359.9
C04 C05 C06 N01 1.6 359.9
C05 C06 N01 C08 179.5 180.0
N01 C06 C05 H05 181.6 180.0
N01 C06 C08 C09 272.8 305.0
N01 C06 C08 H08 32.5 65.0
N01 C06 C08 H08A 153.0 185.0
N02 C02 N01 C06 181.3 180.0
N01 C02 N02 C03 178.3 179.9
N02 C02 C03 C04 179.9 179.9
N02 C02 C03 H03 359.9 359.9
HN02 N02 C02 HN0A 240.0 179.9
C03 C02 N01 C06 360.0 359.9
N01 C02 C03 N02 181.5 180.1
C03 C02 N02 HN02 181.7 180.0
C03 C02 N02 HN0A 301.7 0.1
C02 C03 C04 C05 358.9 360.0
C02 C03 C04 C07 179.5 180.0
C04 C03 C02 H03 180.0 180.0
C02 C03 C04 H03 180.0 180.0
C05 C04 C03 C07 179.4 180.0
C03 C04 C05 C06 359.4 0.1
C03 C04 C05 H05 179.4 179.9
C03 C04 C07 H07 89.6 90.0
C03 C04 C07 H07A 209.6 210.0
C03 C04 C07 H07B 329.6 330.0
N01 C06 C05 C04 1.6 359.9
C03 C04 C05 C07 180.5 180.0
C05 C04 C03 H03 178.9 180.0
C05 C04 C07 H07 270.3 270.0
C05 C04 C07 H07A 30.3 30.1
C05 C04 C07 H07B 150.3 150.0
C04 C05 C06 C08 181.1 180.0
C06 C05 C04 H05 180.0 180.1
C03 C04 C07 C05 179.3 180.0
C07 C04 C03 H03 359.5 360.0
C07 C04 C05 C06 178.8 180.0
C07 C04 C05 H05 358.8 359.9
H07 C07 C04 H07A 240.0 239.9
H07 C07 C04 H07B 120.0 120.0
H07A C07 C04 H07B 240.0 240.0
N01 C06 C05 C08 180.5 180.0
C06 C05 C04 C07 178.8 180.0
C04 C05 C06 H05 180.0 179.9
C05 C06 C08 C09 93.2 125.0
C05 C06 C08 H08 213.0 245.0
C05 C06 C08 H08A 333.5 5.0
N01 C06 C08 C05 179.5 180.0
C08 C06 C05 H05 1.1 0.1
C06 C08 C09 C13 169.7 180.0
C09 C08 C06 H08 240.3 240.0
C09 C08 C06 H08A 119.7 120.0
C06 C08 C09 H09 289.8 300.0
C06 C08 C09 H09A 49.6 60.0
H08 C08 C06 H08A 239.5 240.0
C06 C08 C09 H08 119.7 120.0
C06 C08 C09 H08A 240.3 240.0
C08 C09 C13 C12 106.6 90.0
C08 C09 C13 C14 287.2 269.9
C13 C09 C08 H09 239.9 240.0
C13 C09 C08 H09A 120.1 120.1
H08 C08 C09 H08A 120.6 120.0
H09 C09 C08 H09A 240.2 240.1
C13 C09 C08 H08 49.9 60.0
C13 C09 C08 H08A 289.4 300.0
C08 C09 C13 H09 120.1 120.0
C08 C09 C13 H09A 239.9 240.0
N11 C12 C13 C09 179.8 180.0
C12 C13 C09 C14 179.5 180.0
C09 C13 C12 H12 359.8 360.0
C09 C13 C14 C15 180.1 180.0
C09 C13 C14 H14 0.1 0.0
H09 C09 C13 H09A 119.8 120.0
C09 C13 C12 N11 179.8 180.0
C12 N11 C16 C15 0.3 360.0
C12 N11 C16 H16 180.3 180.0
N11 C12 C13 C14 359.3 360.0
C13 C12 N11 H12 180.0 180.0
C16 N11 C12 C13 0.3 0.0
C16 N11 C12 H12 180.3 180.0
C14 C15 C16 N11 359.6 0.0
N11 C16 C15 N17 179.4 180.1
C15 C16 N11 H16 180.0 179.9
C09 C13 C12 C14 180.5 180.0
C12 C13 C09 H09 346.5 330.0
C12 C13 C09 H09A 226.7 210.0
C13 C12 N11 C16 0.3 0.0
N11 C12 C13 H12 180.0 180.0
C12 C13 C14 C15 0.6 360.0
C12 C13 C14 H14 180.6 180.0
C09 C13 C14 C12 179.5 180.0
C14 C13 C09 H09 167.1 150.0
C14 C13 C09 H09A 47.3 30.0
C14 C13 C12 H12 179.2 180.0
C13 C14 C15 C16 359.9 0.0
C13 C14 C15 N17 180.1 180.0
C15 C14 C13 H14 180.0 180.0
N11 C16 C15 C14 359.6 0.0
C13 C14 C15 H14 180.0 180.0
C16 C15 C14 N17 179.8 180.1
C14 C15 C16 H16 179.6 180.0
C14 C15 N17 C17 355.4 0.1
C14 C15 N17 C18 175.5 180.0
N11 C16 C15 H16 180.0 180.1
C14 C15 C16 N17 180.2 179.9
C16 C15 C14 H14 179.9 180.0
C16 C15 N17 C17 175.6 180.0
C16 C15 N17 C18 355.7 359.9
C14 C15 N17 C16 179.8 180.1
N17 C15 C14 H14 0.1 360.0
N17 C15 C16 H16 359.4 0.0
C17 N17 C15 C18 179.8 180.1
C15 N17 C17 H17 180.0 89.9
C15 N17 C17 H17A 300.0 210.0
C15 N17 C17 H17B 60.0 329.9
C15 N17 C18 C19 248.2 90.0
C15 N17 C18 H18 8.0 210.0
C15 N17 C18 H18A 128.4 330.0
C15 N17 C17 C18 180.2 179.9
C17 N17 C18 C19 68.4 269.9
C17 N17 C18 H18 188.2 29.9
C17 N17 C18 H18A 308.6 149.9
H17 C17 N17 H17A 240.0 239.9
H17 C17 N17 H17B 120.0 120.0
H17A C17 N17 H17B 240.1 240.1
C15 N17 C18 C17 179.8 180.1
C18 N17 C17 H17 359.8 270.0
C18 N17 C17 H17A 119.9 30.1
C18 N17 C17 H17B 239.8 150.0
N17 C18 C19 N20 59.8 180.0
C19 C18 N17 H18 240.2 240.0
C19 C18 N17 H18A 119.8 120.0
N17 C18 C19 H19 180.3 300.0
N17 C18 C19 H19A 299.3 60.0
H18 C18 N17 H18A 239.6 240.0
N17 C18 C19 H18 119.8 120.0
N17 C18 C19 H18A 240.2 240.0
C18 C19 N20 C21 73.6 180.0
N20 C19 C18 H19 239.5 240.0
N20 C19 C18 H19A 120.5 120.0
C18 C19 N20 HN20 194.3 304.0
H18 C18 C19 H18A 120.4 120.0
H19 C19 C18 H19A 241.0 240.0
N20 C19 C18 H18 300.0 60.0
N20 C19 C18 H18A 179.6 300.0
C18 C19 N20 H19 120.5 120.1
C18 C19 N20 H19A 239.5 240.0
C21 N20 C19 HN20 239.3 236.0
C19 N20 C21 H21 180.0 180.0
C19 N20 C21 H21A 300.0 300.0
C19 N20 C21 H21B 60.0 60.0
H19 C19 N20 H19A 119.0 120.0
C21 N20 C19 H19 313.1 60.0
C21 N20 C19 H19A 194.1 300.0
C19 N20 C21 HN20 120.7 124.0
H21 C21 N20 H21A 240.0 240.1
H21 C21 N20 H21B 120.0 120.0
H21A C21 N20 H21B 240.0 240.0
HN02 N02 C02 C03 181.7 180.0
C02 N02 HN02 HN0A 120.0 180.1
HN0A N02 C02 C03 301.7 0.1
C02 N02 HN0A HN02 240.0 179.9
C02 C03 H03 C04 180.0 180.0
H03 C03 C04 C05 178.9 180.0
H03 C03 C04 C07 359.5 360.0
H05 C05 C04 C07 358.8 359.9
C04 C05 H05 C06 180.0 180.1
H05 C05 C06 C08 1.1 0.1
C04 C07 H07 H07A 120.0 120.1
C04 C07 H07 H07B 240.0 240.0
H07A C07 H07 H07B 120.0 119.9
C04 C07 H07A H07 240.0 239.9
C04 C07 H07A H07B 120.0 120.0
H07 C07 H07A H07B 240.0 240.1
C04 C07 H07B H07 120.0 120.0
C04 C07 H07B H07A 240.0 240.0
H07 C07 H07B H07A 120.0 120.0
C06 C08 H08 C09 241.7 240.0
C06 C08 H08 H08A 120.8 120.0
H08 C08 C09 C13 49.9 60.0
C09 C08 H08 H08A 239.1 240.0
H08 C08 C09 H09 170.1 180.0
H08 C08 C09 H09A 289.9 299.9
C06 C08 H08A C09 118.3 120.0
C06 C08 H08A H08 239.2 240.0
H08A C08 C09 C13 289.4 300.0
C09 C08 H08A H08 120.8 120.0
H08A C08 C09 H09 49.5 60.0
H08A C08 C09 H09A 169.3 180.0
C08 C09 H09 C13 239.4 240.0
H09 C09 C08 H08 170.1 180.0
H09 C09 C08 H08A 49.5 60.0
C08 C09 H09 H09A 119.7 119.9
H09 C09 C13 C12 346.5 330.0
H09 C09 C13 C14 167.1 150.0
C13 C09 H09 H09A 240.3 239.9
C08 C09 H09A C13 120.6 120.1
H09A C09 C08 H08 289.9 299.9
H09A C09 C08 H08A 169.3 180.0
C08 C09 H09A H09 240.3 240.1
H09A C09 C13 C12 226.7 210.0
H09A C09 C13 C14 47.3 30.0
C13 C09 H09A H09 119.7 120.0
H12 C12 N11 C16 180.3 180.0
N11 C12 H12 C13 180.0 180.0
H12 C12 C13 C14 179.2 180.0
C13 C14 H14 C15 180.0 180.0
H14 C14 C15 C16 179.9 180.0
H14 C14 C15 N17 0.1 360.0
N11 C16 H16 C15 180.0 179.9
H16 C16 C15 N17 359.4 0.0
H17 C17 N17 C18 359.8 270.0
N17 C17 H17 H17A 120.0 120.1
N17 C17 H17 H17B 240.0 240.0
H17A C17 H17 H17B 120.0 119.9
H17A C17 N17 C18 119.9 30.1
N17 C17 H17A H17 239.9 239.9
N17 C17 H17A H17B 120.0 119.9
H17 C17 H17A H17B 240.0 240.1
H17B C17 N17 C18 239.8 150.0
N17 C17 H17B H17 120.0 120.0
N17 C17 H17B H17A 240.0 240.0
H17 C17 H17B H17A 120.0 120.0
N17 C18 H18 C19 241.2 240.0
N17 C18 H18 H18A 120.6 120.0
H18 C18 C19 N20 300.0 60.0
C19 C18 H18 H18A 239.4 240.0
H18 C18 C19 H19 60.5 180.0
H18 C18 C19 H19A 179.5 300.0
N17 C18 H18A C19 118.8 119.9
N17 C18 H18A H18 239.4 240.0
H18A C18 C19 N20 179.6 300.0
C19 C18 H18A H18 120.6 120.1
H18A C18 C19 H19 300.1 60.0
H18A C18 C19 H19A 59.1 180.0
C18 C19 H19 N20 237.1 240.0
H19 C19 C18 H18 60.5 180.0
H19 C19 C18 H18A 300.1 60.0
C18 C19 H19 H19A 118.5 120.0
H19 C19 N20 C21 313.1 60.0
N20 C19 H19 H19A 241.5 240.0
H19 C19 N20 HN20 73.8 184.0
C18 C19 H19A N20 123.0 120.0
H19A C19 C18 H18 179.5 300.0
H19A C19 C18 H18A 59.1 180.0
C18 C19 H19A H19 241.5 240.0
H19A C19 N20 C21 194.1 300.0
N20 C19 H19A H19 118.5 120.0
H19A C19 N20 HN20 314.8 64.0
C19 N20 HN20 C21 235.8 236.0
HN20 N20 C19 H19 73.8 184.0
HN20 N20 C19 H19A 314.8 64.0
HN20 N20 C21 H21 59.3 56.1
HN20 N20 C21 H21A 179.3 176.0
HN20 N20 C21 H21B 299.3 296.0
H21 C21 N20 HN20 59.3 56.1
N20 C21 H21 H21A 120.0 119.9
N20 C21 H21 H21B 240.0 240.0
H21A C21 H21 H21B 120.0 120.1
H21A C21 N20 HN20 179.3 176.0
N20 C21 H21A H21 240.0 240.1
N20 C21 H21A H21B 120.0 120.0
H21 C21 H21A H21B 240.0 239.9
H21B C21 N20 HN20 299.3 296.0
N20 C21 H21B H21 120.0 120.0
N20 C21 H21B H21A 240.0 240.1
H21 C21 H21B H21A 120.0 120.1