Atom Nomenclature for EWZ

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for EWZ

Atom Name (V3) Atom Name (V2)
O7 O7
C2 C2
C3 C3
C4 C4
C8 C8
C15 C15
C14 C14
C9 C9
N5 N5
N1 N1
C6 C6
S10 S10
C11 C11
C12 C12
O13 O13
C16 C16
C21 C21
C20 C20
C19 C19
CL CL24
C17 C17
C18 C18
S22 S22
O23 O23
O25 O25
N26 N26
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18