Atom Nomenclature for ETQ

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for ETQ

Atom Name (V3) Atom Name (V2)
C1 C1
N1 N1
O1 O1
CL1 CL1
C2 C2
N2 N2
O2 O2
C3 C3
O3 O3
C4 C4
C5 C5
C6 C6
C7 C7
C8 C8
C9 C9
C10 C10
C11 C11
C12 C12
C13 C13
C14 C14
C15 C15
C16 C16
C17 C17
HN1 HN1
HO1 HO1
H3 H3
H6 H6
H6A H6A
H6B H6B
H9 H9
H9A H9A
H10 H10
H11 H11
H11A H11A
H12 H12
H12A H12A
H13 H13
H13A H13A
H14 H14
H14A H14A
H15 H15
H15A H15A
H15B H15B
H16 H16
H16A H16A
H17 H17
H17A H17A
H17B H17B