PDB Chemical Component EQB

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for EQB

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O12 C11 1.216 1.213
C6 C5 1.502 1.530
C17 C15 1.510 1.530
C9 C11 1.500 1.507
C9 O10 1.397 1.429
C9 C4 1.501 1.530
C11 N13 1.322 1.348
C5 C4 1.487 1.531
C5 C7 1.503 1.531
C4 C1 1.486 1.507
C15 C14 1.485 1.530
C15 C16 1.497 1.530
N13 C14 1.460 1.465
C14 C18 1.480 1.507
C7 C8 1.510 1.529
C1 O3 1.219 1.209
C18 N20 1.302 1.347
C18 O19 1.211 1.213
N20 C21 1.443 1.465
C24 C22 1.506 1.529
O26 C25 1.212 1.208
C21 C22 1.482 1.531
C21 C25 1.484 1.506
C22 C23 1.507 1.529
C25 O27 1.342 1.343
O27 C28 1.417 1.452
C28 C29 1.392 1.506
C29 C30 1.371 1.383
C29 C34 1.378 1.383
C30 C31 1.384 1.383
C34 C33 1.382 1.383
C31 C32 1.373 1.383
C33 C32 1.378 1.382
C4 H1 1.100 1.090
C5 H2 1.100 1.090
C6 H3 1.100 1.090
C6 H4 1.100 1.090
C6 H5 1.100 1.091
C7 H6 1.100 1.090
C7 H7 1.100 1.089
C8 H8 1.100 1.090
C8 H9 1.100 1.090
C8 H10 1.100 1.090
C15 H11 1.100 1.090
C17 H12 1.099 1.089
C17 H13 1.100 1.091
C17 H14 1.100 1.090
C21 H15 1.099 1.090
C22 H16 1.100 1.090
C24 H17 1.100 1.089
C24 H18 1.100 1.090
C24 H19 1.099 1.090
C28 H20 1.100 1.090
C28 H21 1.100 1.090
C9 H23 1.100 1.090
O10 H24 0.950 0.967
N13 H25 1.000 0.971
C14 H26 1.100 1.091
C16 H27 1.100 1.090
C16 H28 1.100 1.091
C16 H29 1.100 1.090
N20 H30 1.001 0.971
C23 H31 1.100 1.090
C23 H32 1.100 1.090
C23 H33 1.100 1.090
C30 H34 1.080 1.080
C31 H35 1.080 1.079
C32 H36 1.080 1.080
C33 H37 1.080 1.080
C34 H38 1.080 1.079
C1 OXT 1.338 1.342
OXT HXT 0.950 0.968

Bond Angles for EQB

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O12 C11 N13 123.5 120.0
C6 C5 C7 109.7 109.5
C6 C5 H2 112.0 109.5
C17 C15 C14 109.0 109.4
C17 C15 C16 110.9 109.4
C17 C15 H11 109.9 109.4
O10 C9 C11 106.6 109.5
C9 C11 N13 117.4 120.0
C11 C9 H23 111.7 109.5
O10 C9 H23 113.4 109.5
C9 O10 H24 109.5 114.0
C9 C4 H1 108.1 109.5
C11 N13 C14 122.4 120.0
C11 N13 H25 118.8 120.0
C5 C4 C1 106.3 109.5
C5 C4 H1 108.2 109.5
C5 C7 C8 111.3 109.4
C7 C5 H2 111.9 109.5
C5 C7 H6 109.0 109.5
C5 C7 H7 109.0 109.5
C4 C1 O3 121.2 120.0
C1 C4 H1 108.2 109.5
C4 C1 OXT 112.2 120.0
C14 C15 C16 106.5 109.5
C15 C14 N13 109.5 109.4
C15 C14 C18 104.5 109.5
C14 C15 H11 110.3 109.5
C15 C14 H26 110.2 109.4
C16 C15 H11 110.1 109.5
C15 C16 H27 109.5 109.5
C15 C16 H28 109.5 109.5
C15 C16 H29 109.5 109.5
N13 C14 C18 111.9 109.5
C14 N13 H25 118.8 120.0
N13 C14 H26 110.5 109.5
C14 C18 N20 116.2 120.0
C14 C18 O19 120.9 120.0
C18 C14 H26 110.2 109.5
C8 C7 H6 109.0 109.5
C8 C7 H7 109.0 109.5
C7 C8 H8 109.5 109.5
C7 C8 H9 109.5 109.5
C7 C8 H10 109.5 109.5
O3 C1 OXT 126.6 120.0
O19 C18 N20 122.6 120.0
C18 N20 H30 121.1 120.0
N20 C21 C25 109.2 109.5
N20 C21 H15 111.5 109.5
C24 C22 C23 109.9 109.5
C24 C22 H16 111.5 109.4
O26 C25 O27 125.8 120.0
C22 C21 C25 105.8 109.5
C21 C22 C23 106.4 109.5
C22 C21 H15 110.9 109.4
C21 C22 H16 111.9 109.4
C21 C25 O27 114.2 120.0
C25 C21 H15 110.9 109.5
C23 C22 H16 111.5 109.5
C22 C23 H31 109.5 109.5
C22 C23 H32 109.5 109.5
C22 C23 H33 109.5 109.5
O27 C28 C29 109.0 109.5
O27 C28 H20 109.6 109.5
O27 C28 H21 109.6 109.4
C28 C29 C30 120.5 120.0
C28 C29 C34 121.4 120.0
C29 C28 H20 109.6 109.5
C29 C28 H21 109.6 109.5
C30 C29 C34 118.0 120.0
C29 C30 C31 121.0 120.0
C29 C30 H34 119.5 120.0
C29 C34 C33 121.4 120.0
C29 C34 H38 119.3 120.0
C30 C31 C32 120.8 120.0
C31 C30 H34 119.5 120.0
C30 C31 H35 119.6 120.0
C34 C33 H37 119.9 120.0
C32 C31 H35 119.6 120.0
C31 C32 H36 120.7 120.0
C33 C32 H36 120.7 120.0
H3 C6 H4 109.5 109.5
H3 C6 H5 109.5 109.4
H4 C6 H5 109.5 109.5
H6 C7 H7 109.5 109.5
H8 C8 H9 109.5 109.4
H8 C8 H10 109.5 109.5
H9 C8 H10 109.5 109.5
H12 C17 H13 109.4 109.5
H12 C17 H14 109.5 109.5
H13 C17 H14 109.5 109.4
H17 C24 H18 109.5 109.5
H17 C24 H19 109.5 109.5
H18 C24 H19 109.5 109.4
H20 C28 H21 109.4 109.5
H27 C16 H28 109.5 109.5
H27 C16 H29 109.5 109.5
H28 C16 H29 109.5 109.4
H31 C23 H32 109.5 109.5
H31 C23 H33 109.4 109.4
H32 C23 H33 109.5 109.4
C1 OXT HXT 109.5 117.0

Torsion Angles for EQB

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C9 C11 O12 N13 182.4 180.0
O12 C11 C9 H23 339.0 121.5
O12 C11 N13 C14 2.3 4.8
O12 C11 N13 H25 182.3 184.9
C6 C5 C4 C1 182.2 180.0
C6 C5 C4 H1 298.3 300.0
C6 C5 C7 C8 295.8 295.0
C7 C5 C6 H2 124.9 120.0
C6 C5 C7 H6 56.0 55.0
C6 C5 C7 H7 175.5 175.0
C14 C15 C17 C16 243.0 240.1
C17 C15 C14 N13 294.8 182.1
C17 C15 C14 C18 174.8 62.1
C14 C15 C17 H11 121.0 120.0
C17 C15 C14 H26 56.4 302.1
C16 C15 C17 H11 238.0 240.0
C17 C15 C16 H27 180.0 297.4
C17 C15 C16 H28 300.0 57.4
C17 C15 C16 H29 60.0 177.3
O12 C11 C9 N13 177.7 180.0
O10 C9 C11 H23 235.6 240.0
C11 C9 O10 H24 180.0 300.0
C11 C9 C4 H1 309.9 296.8
C9 C11 N13 C14 180.0 184.8
C9 C11 N13 H25 359.9 4.9
O10 C9 C11 N13 36.9 181.5
C11 C9 O10 H23 123.3 120.1
O10 C9 C4 H1 196.5 176.9
C5 C4 C9 H1 238.5 240.0
C1 C4 C9 H1 118.0 120.0
C9 C4 C1 OXT 35.7 266.8
N13 C11 C9 H23 161.3 301.6
C15 C14 N13 C11 106.0 85.6
C11 N13 C14 C18 221.3 205.7
C14 N13 C11 H25 180.0 179.9
C11 N13 C14 H26 344.5 325.7
C9 C4 C5 H1 121.4 120.0
C5 C4 C1 O3 87.8 326.8
C1 C4 C5 H1 243.9 240.0
C5 C4 C1 OXT 269.7 146.8
C6 C5 C7 H2 235.1 240.0
C7 C5 C4 C1 297.8 300.0
C7 C5 C4 H1 53.9 60.0
C8 C7 C5 H6 239.8 240.0
C8 C7 C5 H7 120.3 120.0
C5 C7 C8 H8 180.0 300.0
C5 C7 C8 H9 300.0 60.0
C5 C7 C8 H10 60.0 180.0
H6 C7 C5 H7 240.5 240.0
C9 C4 C1 H1 242.1 240.0
C5 C4 C1 H1 116.1 120.0
O3 C1 C4 OXT 178.1 180.0
C4 C1 OXT HXT 178.0 180.0
C17 C15 C14 C16 119.8 119.9
C17 C15 C14 H11 239.2 240.0
C11 N13 C14 C15 106.0 85.6
C16 C15 C14 H11 119.4 120.1
C14 C15 C16 H27 298.5 57.3
C14 C15 C16 H28 58.5 177.4
C14 C15 C16 H29 178.5 297.3
N13 C14 C15 C18 120.0 120.0
C15 C14 N13 H25 286.0 265.6
N13 C14 C15 H26 238.3 240.0
C15 C14 C18 N20 234.7 283.1
C15 C14 C18 O19 49.0 103.1
C18 C14 C15 H26 118.3 120.0
C17 C15 C16 C14 241.5 240.1
C17 C15 C16 H11 121.9 120.0
C16 C15 C14 N13 175.0 62.2
C16 C15 C14 C18 55.0 302.1
C14 C15 C16 H11 240.4 239.9
C16 C15 C14 H26 296.7 182.1
H27 C16 C15 H28 240.0 239.9
H27 C16 C15 H29 120.0 120.0
H28 C16 C15 H29 240.0 240.1
C11 N13 C14 H25 180.0 180.1
N13 C14 C15 C16 175.0 62.2
C15 C14 N13 C18 244.6 239.9
N13 C14 C15 H11 55.6 302.1
C15 C14 N13 H26 121.5 119.9
N13 C14 C18 N20 116.4 163.1
N13 C14 C18 O19 290.7 343.1
C18 C14 N13 H26 236.8 240.0
C18 C14 C15 C16 55.0 302.1
C15 C14 C18 N13 118.3 120.0
C18 C14 C15 H11 295.6 182.0
C15 C14 C18 H26 241.7 240.0
C18 C14 N13 H25 41.3 25.6
N13 C14 C18 H26 123.3 120.0
O19 C18 C14 N20 174.3 180.0
C14 C18 N20 H30 0.0 6.3
C8 C7 C5 H2 60.7 55.0
C5 C7 C8 H6 120.3 120.0
C5 C7 C8 H7 239.7 240.0
H6 C7 C8 H7 119.5 120.0
H8 C8 C7 H9 240.0 240.0
H8 C8 C7 H10 120.0 120.0
H9 C8 C7 H10 240.0 240.0
O3 C1 C4 H1 331.7 206.8
C4 C1 O3 OXT 182.2 180.0
O3 C1 OXT HXT 0.0 360.0
C14 C18 N20 O19 174.2 180.0
N20 C18 C14 H26 353.1 43.1
C18 N20 C21 C25 261.3 205.0
C18 N20 C21 H15 24.2 325.0
C14 C18 O19 N20 186.1 180.0
O19 C18 C14 H26 167.4 223.1
O19 C18 N20 H30 185.9 186.4
C22 C21 N20 C25 245.2 240.0
N20 C21 C22 C23 176.9 60.0
C22 C21 N20 H15 122.3 119.9
N20 C21 C22 H16 299.0 180.0
N20 C21 C25 O27 154.6 180.0
C25 C21 N20 H15 237.1 239.9
C24 C22 C21 C25 303.2 180.0
C21 C22 C24 C23 114.2 120.0
C24 C22 C21 H15 182.9 59.9
C21 C22 C24 H16 238.4 240.1
C23 C22 C24 H16 124.2 120.0
C24 C22 C23 H31 180.0 180.0
C24 C22 C23 H32 300.0 300.0
C24 C22 C23 H33 60.0 60.0
C21 C25 O26 O27 182.3 180.0
O26 C25 C21 H15 209.2 240.0
N20 C21 C22 C25 117.0 120.0
N20 C21 C22 H15 237.3 240.0
C24 C22 C21 C23 243.3 239.9
C24 C22 C21 H16 121.3 120.0
C22 C21 C25 O27 271.0 300.0
C25 C21 C22 H15 120.3 120.0
C23 C22 C21 H16 238.0 240.0
C21 C22 C23 H31 66.5 60.0
C21 C22 C23 H32 186.5 180.0
C21 C22 C23 H33 306.5 300.0
N20 C21 C25 H15 123.3 120.0
O26 C25 C21 O27 177.9 180.0
C25 C21 C22 C23 59.9 300.0
C22 C21 C25 H15 239.7 240.0
C25 C21 C22 H16 181.9 60.0
C24 C22 C23 H16 235.8 240.0
C23 C22 C21 C25 59.9 300.0
C23 C22 C21 H15 299.6 180.0
C21 C22 C23 H16 122.3 120.0
H31 C23 C22 H32 240.0 240.0
H31 C23 C22 H33 120.0 120.0
H32 C23 C22 H33 240.0 240.0
O27 C25 C21 H15 31.3 60.0
C25 O27 C28 C29 188.9 180.0
C25 O27 C28 H20 308.8 300.0
C25 O27 C28 H21 68.9 60.0
C21 C25 O27 C28 183.1 180.0
O27 C28 C29 C30 204.7 90.0
O27 C28 C29 C34 25.5 269.7
C29 C28 O27 H20 240.1 240.0
C29 C28 O27 H21 119.9 120.0
H20 C28 O27 H21 239.9 240.0
O27 C28 C29 H20 119.9 120.0
O27 C28 C29 H21 240.1 240.1
C30 C29 C28 C34 179.2 180.3
C28 C29 C30 C31 180.4 180.0
C28 C29 C30 H34 0.4 359.9
C28 C29 C34 C33 179.5 179.8
C28 C29 C34 H38 359.5 0.0
H20 C28 C29 H21 120.1 120.1
C28 C29 C30 C34 180.8 179.7
C30 C29 C28 H20 84.7 330.0
C30 C29 C28 H21 324.6 210.0
C30 C29 C34 C33 0.3 359.5
C30 C29 C34 H38 180.3 179.7
C29 C30 C31 C32 0.2 359.9
C31 C30 C29 H34 180.0 180.1
C29 C30 C31 H35 180.2 179.9
C28 C29 C34 C30 179.2 180.3
C34 C29 C28 H20 265.5 149.7
C34 C29 C28 H21 145.4 29.7
C34 C29 C30 C31 359.6 0.3
C34 C29 C30 H34 179.7 180.2
C29 C34 C33 H37 179.9 180.3
C31 C30 C29 C34 359.6 0.3
C29 C30 C31 H34 180.0 179.9
C32 C31 C30 H35 180.0 180.0
C30 C31 C32 H36 180.0 180.0
C29 C34 C33 H38 180.0 180.3
C34 C33 C32 H36 179.9 179.8
C32 C31 C30 H34 180.2 180.0
C30 C31 C32 H35 180.0 180.0
C33 C32 C31 H36 180.0 180.0
C29 C34 C33 C32 359.9 0.5
C33 C32 C31 H35 180.0 180.0
C31 C32 C33 H36 180.0 180.0
C5 C4 H1 C1 245.2 240.0
H1 C4 C1 O3 331.7 206.8
H1 C4 C1 OXT 153.6 26.8
C6 C5 H2 C7 123.7 120.0
H2 C5 C4 C1 57.1 60.0
H2 C5 C4 H1 173.2 180.0
H2 C5 C7 C8 60.7 55.0
H2 C5 C7 H6 180.9 175.0
H2 C5 C7 H7 300.4 295.0
H3 C6 C5 C7 70.1 60.0
H3 C6 C5 H2 305.2 300.0
H4 C6 H3 H5 120.0 120.0
H4 C6 C5 C7 190.1 180.0
H4 C6 C5 H2 65.2 60.0
H3 C6 H4 H5 240.0 240.0
H5 C6 C5 C7 310.1 300.1
H5 C6 C5 H2 185.2 180.0
H3 C6 H5 H4 120.0 120.0
C5 C7 H6 C8 238.4 240.0
H6 C7 C5 H2 180.9 175.0
C5 C7 H6 H7 119.2 120.0
C8 C7 H6 H7 240.8 240.0
H6 C7 C8 H8 59.7 180.0
H6 C7 C8 H9 179.8 300.0
H6 C7 C8 H10 299.7 60.0
C5 C7 H7 C8 121.6 120.0
H7 C7 C5 H2 300.4 295.0
C5 C7 H7 H6 240.8 240.0
C8 C7 H7 H6 119.2 120.0
H7 C7 C8 H8 300.3 60.0
H7 C7 C8 H9 60.3 180.0
H7 C7 C8 H10 180.3 300.0
H8 C8 C7 H6 59.7 180.0
H8 C8 C7 H7 300.3 60.0
C7 C8 H8 H9 120.0 120.0
C7 C8 H8 H10 240.0 240.0
H9 C8 H8 H10 120.0 119.9
H9 C8 C7 H6 179.8 300.0
H9 C8 C7 H7 60.3 180.0
C7 C8 H9 H8 240.0 240.0
C7 C8 H9 H10 120.0 120.0
H8 C8 H9 H10 240.0 240.1
H10 C8 C7 H6 299.7 60.0
H10 C8 C7 H7 180.3 300.0
C7 C8 H10 H8 120.0 120.0
C7 C8 H10 H9 240.0 240.0
H8 C8 H10 H9 120.0 119.9
C17 C15 H11 C14 120.2 120.0
C17 C15 H11 C16 237.5 240.0
C14 C15 H11 C16 117.2 120.0
H11 C15 C14 N13 55.6 302.1
H11 C15 C14 C18 295.6 182.0
H11 C15 C14 H26 177.2 62.0
H11 C15 C16 H27 58.1 177.4
H11 C15 C16 H28 178.1 297.5
H11 C15 C16 H29 298.1 57.4
H12 C17 C15 C14 180.0 60.4
H12 C17 C15 C16 297.0 180.4
H12 C17 C15 H11 59.0 300.4
H13 C17 H12 H14 120.0 119.9
H13 C17 C15 C14 300.0 180.4
H13 C17 C15 C16 57.0 300.4
H13 C17 C15 H11 179.0 60.4
H12 C17 H13 H14 240.0 240.0
H14 C17 C15 C14 60.0 300.3
H14 C17 C15 C16 177.0 60.3
H14 C17 C15 H11 299.0 180.3
H12 C17 H14 H13 120.0 120.0
N20 C21 H15 C25 238.0 240.0
C22 C21 H15 C25 117.3 120.0
H15 C21 C22 C23 299.6 180.0
H15 C21 C22 H16 61.6 300.0
H15 C21 C25 O27 31.3 60.0
C24 C22 H16 C23 123.3 120.1
H16 C22 C21 C25 181.9 60.0
C21 C22 H16 C23 240.9 240.0
H16 C22 C21 H15 61.6 300.0
H16 C22 C23 H31 304.2 300.0
H16 C22 C23 H32 64.2 60.0
H16 C22 C23 H33 184.2 180.0
H17 C24 C22 C23 65.8 180.0
H17 C24 C22 H16 301.6 60.0
H18 C24 H17 H19 120.0 120.0
H18 C24 C22 C23 185.8 300.0
H18 C24 C22 H16 61.6 180.0
H17 C24 H18 H19 240.0 240.0
H19 C24 C22 C23 305.8 59.9
H19 C24 C22 H16 181.6 299.9
H17 C24 H19 H18 120.0 120.0
O27 C28 H20 C29 240.4 240.0
O27 C28 H20 H21 120.2 120.0
H20 C28 C29 C30 84.7 330.0
H20 C28 C29 C34 265.5 149.7
C29 C28 H20 H21 239.8 240.0
O27 C28 H21 C29 119.6 120.0
O27 C28 H21 H20 239.7 240.0
H21 C28 C29 C30 324.6 210.0
H21 C28 C29 C34 145.4 29.7
C29 C28 H21 H20 120.2 120.0
O10 C9 H23 C11 120.4 120.0
H23 C9 C11 N13 161.3 301.6
H23 C9 O10 H24 56.7 180.0
H23 C9 C4 H1 71.9 56.9
H24 O10 C9 C11 180.0 300.0
H24 O10 C9 H23 56.7 180.0
C11 N13 H25 C14 180.0 179.9
H25 N13 C14 C18 41.3 25.6
H25 N13 C14 H26 164.5 145.6
H26 C14 C15 C16 296.7 182.1
C15 C14 H26 N13 238.9 240.1
C15 C14 H26 C18 114.8 120.0
H26 C14 C15 H11 177.2 62.0
N13 C14 H26 C18 235.9 240.0
H26 C14 N13 H25 164.5 145.6
H26 C14 C18 N20 353.1 43.1
H26 C14 C18 O19 167.4 223.1
H27 C16 C15 H11 58.1 177.4
C15 C16 H27 H28 120.0 120.1
C15 C16 H27 H29 240.0 240.0
H28 C16 H27 H29 120.0 119.9
H28 C16 C15 H11 178.1 297.5
C15 C16 H28 H27 240.0 239.9
C15 C16 H28 H29 120.0 120.0
H27 C16 H28 H29 240.0 240.0
H29 C16 C15 H11 298.1 57.4
C15 C16 H29 H27 120.0 120.0
C15 C16 H29 H28 240.0 240.0
H27 C16 H29 H28 120.0 120.0
H30 N20 C21 C25 81.3 25.0
H30 N20 C21 H15 204.2 145.0
H31 C23 C22 H16 304.2 300.0
C22 C23 H31 H32 120.0 120.1
C22 C23 H31 H33 240.0 240.0
H32 C23 H31 H33 120.0 119.9
H32 C23 C22 H16 64.2 60.0
C22 C23 H32 H31 240.0 239.9
C22 C23 H32 H33 120.0 120.0
H31 C23 H32 H33 240.0 240.1
H33 C23 C22 H16 184.2 180.0
C22 C23 H33 H31 120.0 120.0
C22 C23 H33 H32 240.0 240.0
H31 C23 H33 H32 120.0 119.9
H34 C30 C29 C34 179.7 180.2
C29 C30 H34 C31 180.0 180.1
H34 C30 C31 C32 180.2 180.0
H34 C30 C31 H35 0.2 0.1
C30 C31 H35 C32 180.0 180.0
H35 C31 C30 H34 0.2 0.1
H35 C31 C32 H36 0.0 360.0
H36 C32 C31 H35 0.0 360.0
H37 C33 C32 H36 359.9 360.0
C29 C34 H38 C33 180.0 179.7
H38 C34 C33 H37 359.9 0.0
C4 C1 OXT O3 178.0 180.0
OXT C1 C4 H1 153.6 26.8