PDB Chemical Component EMT

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for EMT

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
SD HG 2.344 2.350
SD CE1 1.752 1.762
HG C1   2.100
C1 C2   1.531
C1 H11   1.090
C1 H12   1.090
C2 H21   1.090
C2 H22   1.090
C2 H23   1.090
CE1 CD1 1.394 1.390
CE1 CZ 1.456 1.405
CD1 CG1 1.419 1.379
CD1 HD1 1.080 1.080
CG1 CD2 1.385 1.386
CG1 HG1 1.080 1.081
CD2 CE2 1.346 1.377
CD2 HD2 1.080 1.080
CE2 CZ 1.358 1.398
CE2 HE2 1.080 1.079
CZ CG 1.428 1.473
CG OD2 1.060 1.349
CG OD1 1.093 1.215
OD2 HO 0.950 0.967

Bond Angles for EMT

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
HG SD CE1 105.9 100.0
SD HG C1   180.0
SD CE1 CD1 117.2 120.2
SD CE1 CZ 122.1 120.2
HG C1 C2   109.4
HG C1 H11   109.5
HG C1 H12   109.5
C2 C1 H11   109.4
C2 C1 H12   109.5
C1 C2 H21   109.5
C1 C2 H22   109.5
C1 C2 H23   109.5
H11 C1 H12   109.5
H21 C2 H22   109.5
H21 C2 H23   109.5
H22 C2 H23   109.5
CD1 CE1 CZ 120.6 119.6
CE1 CD1 CG1 114.8 120.0
CE1 CD1 HD1 122.6 119.9
CE1 CZ CE2 121.5 119.6
CE1 CZ CG 120.5 120.2
CG1 CD1 HD1 122.6 120.0
CD1 CG1 CD2 122.1 120.5
CD1 CG1 HG1 118.9 119.8
CD2 CG1 HG1 119.0 119.8
CG1 CD2 CE2 123.1 120.4
CG1 CD2 HD2 118.4 119.9
CE2 CD2 HD2 118.5 119.7
CD2 CE2 CZ 117.6 119.9
CD2 CE2 HE2 121.2 120.1
CZ CE2 HE2 121.2 120.0
CE2 CZ CG 118.0 120.2
CZ CG OD2 131.4 120.0
CZ CG OD1 130.4 120.0
OD2 CG OD1 98.1 120.0
CG OD2 HO 109.5 117.0

Torsion Angles for EMT

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
HG SD CE1 CD1 113.4 90.0
HG SD CE1 CZ 295.7 269.8
SD HG C1 C2   187.5
SD HG C1 H11   307.5
SD HG C1 H12   67.6
CE1 SD HG C1   352.5
CD1 CE1 SD CZ 177.7 180.2
SD CE1 CD1 CG1 177.6 180.0
SD CE1 CD1 HD1 357.6 360.0
SD CE1 CZ CE2 182.0 179.7
SD CE1 CZ CG 358.9 359.9
C1 HG SD CE1   352.5
C2 C1 HG H11   240.0
C2 C1 HG H12   120.0
HG C1 C2 H21   180.0
HG C1 C2 H22   300.0
HG C1 C2 H23   60.0
H11 C1 HG H12   239.9
HG C1 C2 H11   120.0
HG C1 C2 H12   240.0
H11 C1 C2 H12   120.0
H21 C2 C1 H22   240.0
H21 C2 C1 H23   120.0
H22 C2 C1 H23   240.0
HG C1 H11 C2   240.0
HG C1 H11 H12   120.1
C2 C1 H11 H12   240.0
H11 C1 C2 H21   60.0
H11 C1 C2 H22   180.0
H11 C1 C2 H23   300.0
HG C1 H12 C2   119.9
HG C1 H12 H11   239.9
C2 C1 H12 H11   120.0
H12 C1 C2 H21   299.9
H12 C1 C2 H22   60.0
H12 C1 C2 H23   180.0
H21 C2 C1 H11   60.0
H21 C2 C1 H12   299.9
C1 C2 H21 H22   120.0
C1 C2 H21 H23   240.0
H22 C2 H21 H23   120.0
H22 C2 C1 H11   180.0
H22 C2 C1 H12   60.0
C1 C2 H22 H21   240.0
C1 C2 H22 H23   120.0
H21 C2 H22 H23   240.0
H23 C2 C1 H11   300.0
H23 C2 C1 H12   180.0
C1 C2 H23 H21   120.0
C1 C2 H23 H22   240.0
H21 C2 H23 H22   120.0
SD CE1 CD1 CZ 182.3 179.8
CD1 CE1 CZ CE2 4.4 359.5
CD1 CE1 CZ CG 181.3 179.7
CG1 CD1 CE1 HD1 180.0 180.0
CE1 CD1 CG1 CD2 4.3 0.0
CE1 CD1 CG1 HG1 184.3 179.9
SD CE1 CZ CD1 177.6 180.2
CZ CE1 CD1 CG1 355.4 0.2
CZ CE1 CD1 HD1 175.3 180.2
CD2 CE2 CZ CE1 356.7 0.5
CE1 CZ CE2 HE2 176.8 180.3
CE2 CZ CE1 CG 183.2 179.8
CE1 CZ CG OD2 214.4 180.0
CE1 CZ CG OD1 32.4 0.0
CG1 CD1 CE1 CZ 355.4 0.2
CE1 CD1 CG1 HD1 180.0 180.0
CD2 CG1 CD1 HG1 180.0 180.1
CD1 CG1 CD2 CE2 356.5 360.0
CD1 CG1 CD2 HD2 176.5 180.0
HD1 CD1 CE1 CZ 175.3 180.2
CE1 CD1 HD1 CG1 180.0 180.0
HD1 CD1 CG1 CD2 184.3 180.1
HD1 CD1 CG1 HG1 4.3 360.0
CD2 CG1 CD1 HD1 184.3 180.1
CD1 CG1 CD2 HG1 180.0 179.9
CE2 CD2 CG1 HD2 180.0 180.0
CG1 CD2 CE2 CZ 2.9 359.7
CG1 CD2 CE2 HE2 182.8 180.0
HG1 CG1 CD1 HD1 4.3 360.0
CD1 CG1 HG1 CD2 180.0 180.1
HG1 CG1 CD2 CE2 176.5 180.1
HG1 CG1 CD2 HD2 356.5 0.1
CE1 CZ CE2 CD2 356.7 0.5
CE2 CD2 CG1 HG1 176.5 180.1
CG1 CD2 CE2 HD2 180.0 180.0
CZ CE2 CD2 HE2 180.0 179.7
CD2 CE2 CZ CG 179.8 180.3
HD2 CD2 CG1 HG1 356.5 0.1
CG1 CD2 HD2 CE2 180.0 180.0
HD2 CD2 CE2 CZ 182.8 179.8
HD2 CD2 CE2 HE2 2.8 0.0
CE1 CZ CE2 CG 176.9 180.2
CZ CE2 CD2 HD2 182.8 179.8
CD2 CE2 CZ HE2 180.0 180.3
CE2 CZ CG OD2 31.3 0.2
CE2 CZ CG OD1 209.3 180.2
HE2 CE2 CD2 HD2 2.8 0.0
CD2 CE2 HE2 CZ 180.0 179.7
HE2 CE2 CZ CG 359.9 0.1
CE1 CZ CG CE2 183.1 179.8
CG CZ CE2 HE2 359.9 0.1
OD2 CG CZ OD1 182.0 180.0
CZ CG OD2 HO 178.4 180.0
CZ CG OD2 OD1 178.5 180.0
CZ CG OD1 OD2 181.5 180.0
OD1 CG OD2 HO 360.0 0.0
HO OD2 CG OD1 360.0 0.0