PDB Chemical Component EMT
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for EMT
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
SD |
HG |
2.344 |
2.350 |
SD |
CE1 |
1.752 |
1.762 |
HG |
C1 |
|
2.100 |
C1 |
C2 |
|
1.531 |
C1 |
H11 |
|
1.090 |
C1 |
H12 |
|
1.090 |
C2 |
H21 |
|
1.090 |
C2 |
H22 |
|
1.090 |
C2 |
H23 |
|
1.090 |
CE1 |
CD1 |
1.394 |
1.390 |
CE1 |
CZ |
1.456 |
1.405 |
CD1 |
CG1 |
1.419 |
1.379 |
CD1 |
HD1 |
1.080 |
1.080 |
CG1 |
CD2 |
1.385 |
1.386 |
CG1 |
HG1 |
1.080 |
1.081 |
CD2 |
CE2 |
1.346 |
1.377 |
CD2 |
HD2 |
1.080 |
1.080 |
CE2 |
CZ |
1.358 |
1.398 |
CE2 |
HE2 |
1.080 |
1.079 |
CZ |
CG |
1.428 |
1.473 |
CG |
OD2 |
1.060 |
1.349 |
CG |
OD1 |
1.093 |
1.215 |
OD2 |
HO |
0.950 |
0.967 |
Bond Angles for EMT
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
HG |
SD |
CE1 |
105.9 |
100.0 |
SD |
HG |
C1 |
|
180.0 |
SD |
CE1 |
CD1 |
117.2 |
120.2 |
SD |
CE1 |
CZ |
122.1 |
120.2 |
HG |
C1 |
C2 |
|
109.4 |
HG |
C1 |
H11 |
|
109.5 |
HG |
C1 |
H12 |
|
109.5 |
C2 |
C1 |
H11 |
|
109.4 |
C2 |
C1 |
H12 |
|
109.5 |
C1 |
C2 |
H21 |
|
109.5 |
C1 |
C2 |
H22 |
|
109.5 |
C1 |
C2 |
H23 |
|
109.5 |
H11 |
C1 |
H12 |
|
109.5 |
H21 |
C2 |
H22 |
|
109.5 |
H21 |
C2 |
H23 |
|
109.5 |
H22 |
C2 |
H23 |
|
109.5 |
CD1 |
CE1 |
CZ |
120.6 |
119.6 |
CE1 |
CD1 |
CG1 |
114.8 |
120.0 |
CE1 |
CD1 |
HD1 |
122.6 |
119.9 |
CE1 |
CZ |
CE2 |
121.5 |
119.6 |
CE1 |
CZ |
CG |
120.5 |
120.2 |
CG1 |
CD1 |
HD1 |
122.6 |
120.0 |
CD1 |
CG1 |
CD2 |
122.1 |
120.5 |
CD1 |
CG1 |
HG1 |
118.9 |
119.8 |
CD2 |
CG1 |
HG1 |
119.0 |
119.8 |
CG1 |
CD2 |
CE2 |
123.1 |
120.4 |
CG1 |
CD2 |
HD2 |
118.4 |
119.9 |
CE2 |
CD2 |
HD2 |
118.5 |
119.7 |
CD2 |
CE2 |
CZ |
117.6 |
119.9 |
CD2 |
CE2 |
HE2 |
121.2 |
120.1 |
CZ |
CE2 |
HE2 |
121.2 |
120.0 |
CE2 |
CZ |
CG |
118.0 |
120.2 |
CZ |
CG |
OD2 |
131.4 |
120.0 |
CZ |
CG |
OD1 |
130.4 |
120.0 |
OD2 |
CG |
OD1 |
98.1 |
120.0 |
CG |
OD2 |
HO |
109.5 |
117.0 |
Torsion Angles for EMT
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
HG |
SD |
CE1 |
CD1 |
113.4 |
90.0 |
HG |
SD |
CE1 |
CZ |
295.7 |
269.8 |
SD |
HG |
C1 |
C2 |
|
187.5 |
SD |
HG |
C1 |
H11 |
|
307.5 |
SD |
HG |
C1 |
H12 |
|
67.6 |
CE1 |
SD |
HG |
C1 |
|
352.5 |
CD1 |
CE1 |
SD |
CZ |
177.7 |
180.2 |
SD |
CE1 |
CD1 |
CG1 |
177.6 |
180.0 |
SD |
CE1 |
CD1 |
HD1 |
357.6 |
360.0 |
SD |
CE1 |
CZ |
CE2 |
182.0 |
179.7 |
SD |
CE1 |
CZ |
CG |
358.9 |
359.9 |
C1 |
HG |
SD |
CE1 |
|
352.5 |
C2 |
C1 |
HG |
H11 |
|
240.0 |
C2 |
C1 |
HG |
H12 |
|
120.0 |
HG |
C1 |
C2 |
H21 |
|
180.0 |
HG |
C1 |
C2 |
H22 |
|
300.0 |
HG |
C1 |
C2 |
H23 |
|
60.0 |
H11 |
C1 |
HG |
H12 |
|
239.9 |
HG |
C1 |
C2 |
H11 |
|
120.0 |
HG |
C1 |
C2 |
H12 |
|
240.0 |
H11 |
C1 |
C2 |
H12 |
|
120.0 |
H21 |
C2 |
C1 |
H22 |
|
240.0 |
H21 |
C2 |
C1 |
H23 |
|
120.0 |
H22 |
C2 |
C1 |
H23 |
|
240.0 |
HG |
C1 |
H11 |
C2 |
|
240.0 |
HG |
C1 |
H11 |
H12 |
|
120.1 |
C2 |
C1 |
H11 |
H12 |
|
240.0 |
H11 |
C1 |
C2 |
H21 |
|
60.0 |
H11 |
C1 |
C2 |
H22 |
|
180.0 |
H11 |
C1 |
C2 |
H23 |
|
300.0 |
HG |
C1 |
H12 |
C2 |
|
119.9 |
HG |
C1 |
H12 |
H11 |
|
239.9 |
C2 |
C1 |
H12 |
H11 |
|
120.0 |
H12 |
C1 |
C2 |
H21 |
|
299.9 |
H12 |
C1 |
C2 |
H22 |
|
60.0 |
H12 |
C1 |
C2 |
H23 |
|
180.0 |
H21 |
C2 |
C1 |
H11 |
|
60.0 |
H21 |
C2 |
C1 |
H12 |
|
299.9 |
C1 |
C2 |
H21 |
H22 |
|
120.0 |
C1 |
C2 |
H21 |
H23 |
|
240.0 |
H22 |
C2 |
H21 |
H23 |
|
120.0 |
H22 |
C2 |
C1 |
H11 |
|
180.0 |
H22 |
C2 |
C1 |
H12 |
|
60.0 |
C1 |
C2 |
H22 |
H21 |
|
240.0 |
C1 |
C2 |
H22 |
H23 |
|
120.0 |
H21 |
C2 |
H22 |
H23 |
|
240.0 |
H23 |
C2 |
C1 |
H11 |
|
300.0 |
H23 |
C2 |
C1 |
H12 |
|
180.0 |
C1 |
C2 |
H23 |
H21 |
|
120.0 |
C1 |
C2 |
H23 |
H22 |
|
240.0 |
H21 |
C2 |
H23 |
H22 |
|
120.0 |
SD |
CE1 |
CD1 |
CZ |
182.3 |
179.8 |
CD1 |
CE1 |
CZ |
CE2 |
4.4 |
359.5 |
CD1 |
CE1 |
CZ |
CG |
181.3 |
179.7 |
CG1 |
CD1 |
CE1 |
HD1 |
180.0 |
180.0 |
CE1 |
CD1 |
CG1 |
CD2 |
4.3 |
0.0 |
CE1 |
CD1 |
CG1 |
HG1 |
184.3 |
179.9 |
SD |
CE1 |
CZ |
CD1 |
177.6 |
180.2 |
CZ |
CE1 |
CD1 |
CG1 |
355.4 |
0.2 |
CZ |
CE1 |
CD1 |
HD1 |
175.3 |
180.2 |
CD2 |
CE2 |
CZ |
CE1 |
356.7 |
0.5 |
CE1 |
CZ |
CE2 |
HE2 |
176.8 |
180.3 |
CE2 |
CZ |
CE1 |
CG |
183.2 |
179.8 |
CE1 |
CZ |
CG |
OD2 |
214.4 |
180.0 |
CE1 |
CZ |
CG |
OD1 |
32.4 |
0.0 |
CG1 |
CD1 |
CE1 |
CZ |
355.4 |
0.2 |
CE1 |
CD1 |
CG1 |
HD1 |
180.0 |
180.0 |
CD2 |
CG1 |
CD1 |
HG1 |
180.0 |
180.1 |
CD1 |
CG1 |
CD2 |
CE2 |
356.5 |
360.0 |
CD1 |
CG1 |
CD2 |
HD2 |
176.5 |
180.0 |
HD1 |
CD1 |
CE1 |
CZ |
175.3 |
180.2 |
CE1 |
CD1 |
HD1 |
CG1 |
180.0 |
180.0 |
HD1 |
CD1 |
CG1 |
CD2 |
184.3 |
180.1 |
HD1 |
CD1 |
CG1 |
HG1 |
4.3 |
360.0 |
CD2 |
CG1 |
CD1 |
HD1 |
184.3 |
180.1 |
CD1 |
CG1 |
CD2 |
HG1 |
180.0 |
179.9 |
CE2 |
CD2 |
CG1 |
HD2 |
180.0 |
180.0 |
CG1 |
CD2 |
CE2 |
CZ |
2.9 |
359.7 |
CG1 |
CD2 |
CE2 |
HE2 |
182.8 |
180.0 |
HG1 |
CG1 |
CD1 |
HD1 |
4.3 |
360.0 |
CD1 |
CG1 |
HG1 |
CD2 |
180.0 |
180.1 |
HG1 |
CG1 |
CD2 |
CE2 |
176.5 |
180.1 |
HG1 |
CG1 |
CD2 |
HD2 |
356.5 |
0.1 |
CE1 |
CZ |
CE2 |
CD2 |
356.7 |
0.5 |
CE2 |
CD2 |
CG1 |
HG1 |
176.5 |
180.1 |
CG1 |
CD2 |
CE2 |
HD2 |
180.0 |
180.0 |
CZ |
CE2 |
CD2 |
HE2 |
180.0 |
179.7 |
CD2 |
CE2 |
CZ |
CG |
179.8 |
180.3 |
HD2 |
CD2 |
CG1 |
HG1 |
356.5 |
0.1 |
CG1 |
CD2 |
HD2 |
CE2 |
180.0 |
180.0 |
HD2 |
CD2 |
CE2 |
CZ |
182.8 |
179.8 |
HD2 |
CD2 |
CE2 |
HE2 |
2.8 |
0.0 |
CE1 |
CZ |
CE2 |
CG |
176.9 |
180.2 |
CZ |
CE2 |
CD2 |
HD2 |
182.8 |
179.8 |
CD2 |
CE2 |
CZ |
HE2 |
180.0 |
180.3 |
CE2 |
CZ |
CG |
OD2 |
31.3 |
0.2 |
CE2 |
CZ |
CG |
OD1 |
209.3 |
180.2 |
HE2 |
CE2 |
CD2 |
HD2 |
2.8 |
0.0 |
CD2 |
CE2 |
HE2 |
CZ |
180.0 |
179.7 |
HE2 |
CE2 |
CZ |
CG |
359.9 |
0.1 |
CE1 |
CZ |
CG |
CE2 |
183.1 |
179.8 |
CG |
CZ |
CE2 |
HE2 |
359.9 |
0.1 |
OD2 |
CG |
CZ |
OD1 |
182.0 |
180.0 |
CZ |
CG |
OD2 |
HO |
178.4 |
180.0 |
CZ |
CG |
OD2 |
OD1 |
178.5 |
180.0 |
CZ |
CG |
OD1 |
OD2 |
181.5 |
180.0 |
OD1 |
CG |
OD2 |
HO |
360.0 |
0.0 |
HO |
OD2 |
CG |
OD1 |
360.0 |
0.0 |