PDB Chemical Component EMO
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for EMO
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
O1 |
1.392 |
1.356 |
C1 |
C2 |
1.431 |
1.389 |
C1 |
C20 |
1.468 |
1.399 |
O1 |
HO1 |
0.950 |
0.966 |
C2 |
C3 |
1.427 |
1.385 |
C2 |
H2 |
1.103 |
1.080 |
C3 |
O3 |
1.391 |
1.357 |
C3 |
C4 |
1.438 |
1.392 |
O3 |
HO3 |
0.951 |
0.966 |
C4 |
C5 |
1.436 |
1.390 |
C4 |
H4 |
1.103 |
1.080 |
C5 |
C6 |
1.544 |
1.477 |
C5 |
C20 |
1.464 |
1.408 |
C6 |
O6 |
1.227 |
1.215 |
C6 |
C7 |
1.548 |
1.478 |
C7 |
C8 |
1.457 |
1.391 |
C7 |
C18 |
1.460 |
1.406 |
C8 |
C9 |
1.452 |
1.386 |
C8 |
H8 |
1.104 |
1.080 |
C9 |
C10 |
1.498 |
1.507 |
C9 |
C16 |
1.429 |
1.379 |
C10 |
H101 |
1.114 |
1.090 |
C10 |
H102 |
1.115 |
1.090 |
C10 |
H103 |
1.115 |
1.090 |
C16 |
C17 |
1.428 |
1.392 |
C16 |
H16 |
1.102 |
1.080 |
C17 |
O17 |
1.421 |
1.356 |
C17 |
C18 |
1.440 |
1.398 |
O17 |
H17 |
0.950 |
0.966 |
C18 |
C19 |
1.540 |
1.474 |
C19 |
O19 |
1.224 |
1.216 |
C19 |
C20 |
1.544 |
1.472 |
Bond Angles for EMO
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O1 |
C1 |
C2 |
115.2 |
120.0 |
O1 |
C1 |
C20 |
124.7 |
120.1 |
C1 |
O1 |
HO1 |
115.2 |
106.8 |
C2 |
C1 |
C20 |
120.1 |
119.9 |
C1 |
C2 |
C3 |
119.6 |
120.3 |
C1 |
C2 |
H2 |
120.3 |
119.9 |
C1 |
C20 |
C5 |
119.6 |
119.7 |
C1 |
C20 |
C19 |
120.3 |
120.2 |
C3 |
C2 |
H2 |
120.0 |
119.9 |
C2 |
C3 |
O3 |
120.6 |
119.8 |
C2 |
C3 |
C4 |
121.3 |
120.4 |
O3 |
C3 |
C4 |
118.1 |
119.8 |
C3 |
O3 |
HO3 |
120.7 |
106.8 |
C3 |
C4 |
C5 |
120.5 |
120.0 |
C3 |
C4 |
H4 |
119.8 |
120.0 |
C5 |
C4 |
H4 |
119.7 |
120.0 |
C4 |
C5 |
C6 |
120.5 |
120.3 |
C4 |
C5 |
C20 |
118.9 |
119.7 |
C6 |
C5 |
C20 |
120.6 |
120.0 |
C5 |
C6 |
O6 |
120.5 |
120.1 |
C5 |
C6 |
C7 |
119.1 |
119.8 |
C5 |
C20 |
C19 |
120.0 |
120.1 |
O6 |
C6 |
C7 |
120.4 |
120.1 |
C6 |
C7 |
C8 |
120.8 |
120.3 |
C6 |
C7 |
C18 |
120.1 |
120.0 |
C8 |
C7 |
C18 |
119.1 |
119.7 |
C7 |
C8 |
C9 |
120.2 |
120.1 |
C7 |
C8 |
H8 |
120.1 |
120.0 |
C7 |
C18 |
C17 |
118.9 |
119.6 |
C7 |
C18 |
C19 |
120.7 |
120.2 |
C9 |
C8 |
H8 |
119.7 |
120.0 |
C8 |
C9 |
C10 |
124.4 |
119.7 |
C8 |
C9 |
C16 |
120.1 |
120.5 |
C10 |
C9 |
C16 |
115.4 |
119.7 |
C9 |
C10 |
H101 |
124.5 |
109.5 |
C9 |
C10 |
H102 |
106.9 |
109.5 |
C9 |
C10 |
H103 |
106.9 |
109.5 |
C9 |
C16 |
C17 |
119.7 |
120.3 |
C9 |
C16 |
H16 |
120.2 |
119.8 |
H101 |
C10 |
H102 |
106.9 |
109.4 |
H101 |
C10 |
H103 |
106.9 |
109.5 |
H102 |
C10 |
H103 |
102.7 |
109.5 |
C17 |
C16 |
H16 |
120.1 |
119.9 |
C16 |
C17 |
O17 |
116.6 |
120.1 |
C16 |
C17 |
C18 |
121.9 |
119.8 |
O17 |
C17 |
C18 |
121.5 |
120.2 |
C17 |
O17 |
H17 |
116.5 |
106.8 |
C17 |
C18 |
C19 |
120.3 |
120.2 |
C18 |
C19 |
O19 |
120.9 |
120.0 |
C18 |
C19 |
C20 |
119.4 |
120.0 |
O19 |
C19 |
C20 |
119.7 |
120.0 |
Torsion Angles for EMO
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
O1 |
C20 |
180.1 |
180.0 |
O1 |
C1 |
C2 |
C3 |
180.0 |
180.0 |
O1 |
C1 |
C2 |
H2 |
360.0 |
360.0 |
O1 |
C1 |
C20 |
C5 |
179.9 |
180.0 |
O1 |
C1 |
C20 |
C19 |
359.9 |
0.1 |
O1 |
C1 |
C2 |
C20 |
179.9 |
180.0 |
C2 |
C1 |
O1 |
HO1 |
180.0 |
270.0 |
C2 |
C1 |
C20 |
C5 |
359.8 |
360.0 |
C2 |
C1 |
C20 |
C19 |
179.8 |
180.0 |
C3 |
C2 |
C1 |
H2 |
180.0 |
180.0 |
C1 |
C2 |
C3 |
O3 |
180.1 |
180.1 |
C1 |
C2 |
C3 |
C4 |
0.2 |
0.0 |
O1 |
C1 |
C20 |
C2 |
180.1 |
180.0 |
C20 |
C1 |
O1 |
HO1 |
359.8 |
90.0 |
C20 |
C1 |
C2 |
C3 |
0.1 |
360.0 |
C20 |
C1 |
C2 |
H2 |
180.1 |
180.0 |
C4 |
C5 |
C20 |
C1 |
0.1 |
0.0 |
C6 |
C5 |
C20 |
C1 |
179.7 |
180.1 |
C5 |
C20 |
C1 |
C19 |
180.1 |
180.0 |
C18 |
C19 |
C20 |
C1 |
180.8 |
179.9 |
O19 |
C19 |
C20 |
C1 |
359.8 |
359.9 |
HO1 |
O1 |
C1 |
C2 |
180.0 |
270.0 |
HO1 |
O1 |
C1 |
C20 |
359.8 |
90.0 |
C3 |
C2 |
C1 |
C20 |
0.1 |
360.0 |
C1 |
C2 |
C3 |
H2 |
180.0 |
180.0 |
O3 |
C3 |
C2 |
C4 |
179.9 |
180.0 |
C2 |
C3 |
O3 |
HO3 |
180.0 |
90.0 |
C2 |
C3 |
C4 |
C5 |
359.7 |
0.0 |
C2 |
C3 |
C4 |
H4 |
179.7 |
180.0 |
H2 |
C2 |
C1 |
C20 |
180.1 |
180.0 |
C1 |
C2 |
H2 |
C3 |
180.0 |
180.0 |
H2 |
C2 |
C3 |
O3 |
0.1 |
0.0 |
H2 |
C2 |
C3 |
C4 |
180.1 |
180.0 |
O3 |
C3 |
C2 |
H2 |
0.1 |
0.0 |
C2 |
C3 |
O3 |
C4 |
180.1 |
180.0 |
O3 |
C3 |
C4 |
C5 |
179.8 |
180.0 |
O3 |
C3 |
C4 |
H4 |
359.8 |
359.9 |
C4 |
C3 |
C2 |
H2 |
180.1 |
180.0 |
C2 |
C3 |
C4 |
O3 |
179.9 |
180.0 |
C4 |
C3 |
O3 |
HO3 |
359.9 |
270.0 |
C5 |
C4 |
C3 |
H4 |
180.0 |
180.0 |
C3 |
C4 |
C5 |
C6 |
180.5 |
179.9 |
C3 |
C4 |
C5 |
C20 |
0.1 |
360.0 |
HO3 |
O3 |
C3 |
C4 |
359.9 |
270.0 |
C1 |
C20 |
C5 |
C4 |
0.1 |
0.0 |
C3 |
C4 |
C5 |
H4 |
180.0 |
180.0 |
C6 |
C5 |
C4 |
C20 |
180.3 |
179.9 |
C4 |
C5 |
C6 |
O6 |
359.6 |
0.1 |
C4 |
C5 |
C6 |
C7 |
180.0 |
180.0 |
C4 |
C5 |
C20 |
C19 |
180.1 |
180.0 |
C3 |
C4 |
H4 |
C5 |
180.0 |
180.0 |
H4 |
C4 |
C5 |
C6 |
0.5 |
360.0 |
H4 |
C4 |
C5 |
C20 |
180.1 |
180.0 |
C1 |
C20 |
C5 |
C6 |
179.7 |
180.1 |
C6 |
C5 |
C4 |
H4 |
0.5 |
360.0 |
C4 |
C5 |
C6 |
C20 |
179.6 |
180.1 |
C6 |
C5 |
C20 |
C19 |
359.8 |
0.0 |
O6 |
C6 |
C5 |
C7 |
179.6 |
180.1 |
C5 |
C6 |
C7 |
C8 |
180.6 |
180.2 |
C5 |
C6 |
C7 |
C18 |
359.0 |
0.1 |
C1 |
C20 |
C5 |
C19 |
179.9 |
180.0 |
C20 |
C5 |
C4 |
H4 |
180.1 |
180.0 |
C4 |
C5 |
C20 |
C6 |
180.3 |
179.9 |
C20 |
C5 |
C6 |
O6 |
180.0 |
180.0 |
C20 |
C5 |
C6 |
C7 |
0.4 |
359.9 |
C18 |
C19 |
C20 |
C5 |
0.7 |
360.0 |
O19 |
C19 |
C20 |
C5 |
179.7 |
180.0 |
O6 |
C6 |
C5 |
C20 |
180.0 |
180.0 |
C5 |
C6 |
O6 |
C7 |
180.4 |
179.9 |
O6 |
C6 |
C7 |
C8 |
0.9 |
0.1 |
O6 |
C6 |
C7 |
C18 |
179.3 |
180.0 |
C7 |
C6 |
C5 |
C20 |
0.4 |
359.9 |
C5 |
C6 |
C7 |
O6 |
179.6 |
180.1 |
C8 |
C7 |
C6 |
C18 |
181.6 |
180.1 |
C6 |
C7 |
C8 |
C9 |
179.6 |
180.3 |
C6 |
C7 |
C8 |
H8 |
359.5 |
0.1 |
C6 |
C7 |
C18 |
C17 |
180.2 |
180.0 |
C6 |
C7 |
C18 |
C19 |
1.6 |
359.9 |
C6 |
C7 |
C8 |
C18 |
178.4 |
179.9 |
C8 |
C7 |
C18 |
C17 |
358.6 |
359.9 |
C8 |
C7 |
C18 |
C19 |
180.0 |
179.8 |
C9 |
C8 |
C7 |
H8 |
180.0 |
180.2 |
C7 |
C8 |
C9 |
C10 |
179.3 |
179.8 |
C7 |
C8 |
C9 |
C16 |
359.1 |
359.6 |
C6 |
C7 |
C18 |
C8 |
181.6 |
180.1 |
C18 |
C7 |
C8 |
C9 |
1.1 |
0.3 |
C18 |
C7 |
C8 |
H8 |
181.1 |
180.2 |
C16 |
C17 |
C18 |
C7 |
1.4 |
360.0 |
O17 |
C17 |
C18 |
C7 |
180.5 |
179.9 |
C17 |
C18 |
C7 |
C19 |
178.6 |
180.1 |
C7 |
C18 |
C19 |
O19 |
179.6 |
180.0 |
C7 |
C18 |
C19 |
C20 |
358.6 |
0.1 |
C9 |
C8 |
C7 |
C18 |
1.1 |
0.3 |
C7 |
C8 |
C9 |
H8 |
180.0 |
179.8 |
C10 |
C9 |
C8 |
C16 |
180.1 |
180.3 |
C8 |
C9 |
C10 |
H101 |
180.0 |
269.8 |
C8 |
C9 |
C10 |
H102 |
305.3 |
29.8 |
C8 |
C9 |
C10 |
H103 |
54.7 |
149.8 |
C8 |
C9 |
C16 |
C17 |
0.8 |
0.3 |
C8 |
C9 |
C16 |
H16 |
180.8 |
180.2 |
H8 |
C8 |
C7 |
C18 |
181.1 |
180.2 |
C7 |
C8 |
H8 |
C9 |
180.0 |
180.2 |
H8 |
C8 |
C9 |
C10 |
359.3 |
360.0 |
H8 |
C8 |
C9 |
C16 |
179.2 |
179.7 |
C10 |
C9 |
C8 |
H8 |
359.3 |
360.0 |
C8 |
C9 |
C10 |
C16 |
179.9 |
179.7 |
C10 |
C9 |
C16 |
C17 |
180.7 |
180.0 |
C10 |
C9 |
C16 |
H16 |
0.7 |
360.0 |
H101 |
C10 |
C9 |
H102 |
234.7 |
240.0 |
H101 |
C10 |
C9 |
H103 |
125.3 |
120.0 |
H102 |
C10 |
C9 |
H103 |
250.6 |
240.0 |
C16 |
C9 |
C8 |
H8 |
179.2 |
179.7 |
C8 |
C9 |
C16 |
C10 |
180.1 |
180.3 |
C16 |
C9 |
C10 |
H101 |
0.1 |
90.1 |
C16 |
C9 |
C10 |
H102 |
125.4 |
210.0 |
C16 |
C9 |
C10 |
H103 |
234.8 |
330.0 |
C17 |
C16 |
C9 |
H16 |
180.0 |
180.1 |
C9 |
C16 |
C17 |
O17 |
179.8 |
180.0 |
C9 |
C16 |
C17 |
C18 |
358.9 |
360.0 |
H101 |
C10 |
C9 |
C16 |
0.1 |
90.1 |
C9 |
C10 |
H101 |
H102 |
125.3 |
120.0 |
C9 |
C10 |
H101 |
H103 |
234.7 |
240.0 |
H102 |
C10 |
H101 |
H103 |
109.4 |
120.0 |
H102 |
C10 |
C9 |
C16 |
125.4 |
210.0 |
C9 |
C10 |
H102 |
H101 |
224.7 |
240.0 |
C9 |
C10 |
H102 |
H103 |
112.3 |
120.0 |
H101 |
C10 |
H102 |
H103 |
247.6 |
240.0 |
H103 |
C10 |
C9 |
C16 |
234.8 |
330.0 |
C9 |
C10 |
H103 |
H101 |
135.3 |
120.0 |
C9 |
C10 |
H103 |
H102 |
247.6 |
240.0 |
H101 |
C10 |
H103 |
H102 |
112.3 |
120.0 |
C7 |
C18 |
C17 |
C16 |
1.4 |
360.0 |
C9 |
C16 |
C17 |
H16 |
180.0 |
179.9 |
O17 |
C17 |
C16 |
C18 |
180.8 |
180.0 |
C16 |
C17 |
O17 |
H17 |
180.0 |
90.0 |
C16 |
C17 |
C18 |
C19 |
180.0 |
180.0 |
C9 |
C16 |
H16 |
C17 |
180.0 |
180.1 |
H16 |
C16 |
C17 |
O17 |
359.8 |
0.1 |
H16 |
C16 |
C17 |
C18 |
178.9 |
180.0 |
C7 |
C18 |
C17 |
O17 |
180.5 |
179.9 |
O17 |
C17 |
C16 |
H16 |
359.8 |
0.1 |
C16 |
C17 |
O17 |
C18 |
179.2 |
180.0 |
O17 |
C17 |
C18 |
C19 |
359.1 |
360.0 |
C7 |
C18 |
C17 |
C19 |
181.4 |
179.9 |
C18 |
C17 |
C16 |
H16 |
178.9 |
180.0 |
C16 |
C17 |
C18 |
O17 |
180.9 |
180.0 |
C18 |
C17 |
O17 |
H17 |
0.9 |
270.1 |
C17 |
C18 |
C19 |
O19 |
1.0 |
360.0 |
C17 |
C18 |
C19 |
C20 |
180.0 |
180.0 |
H17 |
O17 |
C17 |
C18 |
0.9 |
270.1 |
C1 |
C20 |
C19 |
C18 |
180.8 |
179.9 |
C5 |
C20 |
C19 |
C18 |
0.7 |
360.0 |
C7 |
C18 |
C19 |
C17 |
178.6 |
180.1 |
O19 |
C19 |
C18 |
C20 |
181.0 |
180.0 |
C1 |
C20 |
C19 |
O19 |
359.8 |
359.9 |
C5 |
C20 |
C19 |
O19 |
179.7 |
180.0 |
C18 |
C19 |
O19 |
C20 |
179.0 |
180.0 |
C1 |
C20 |
C19 |
C5 |
180.1 |
180.0 |
C18 |
C19 |
C20 |
O19 |
181.0 |
180.0 |