PDB Chemical Component EK8

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for EK8

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C83	C84	1.507	1.530
C83	C82	1.605	1.531
C84	N89	1.485	1.469
C82	C81	1.538	1.531
C14	C13	1.502	1.530
N89	C98	1.408	1.390
N89	C80	1.555	1.468
C98	C99	1.487	1.392
C98	C19	1.489	1.392
C81	C80	1.565	1.530
C99	C22	1.463	1.377
C19	C17	1.465	1.376
C13	C12	1.490	1.530
C22	C87	1.473	1.398
C17	C87	1.483	1.398
C87	C97	1.406	1.475
O99	C97	1.259	1.216
C12	O3	1.427	1.429
C97	N99	1.407	1.347
O3	C9	1.413	1.359
N99	C15	1.461	1.464
C15	C8	1.472	1.507
C9	C8	1.479	1.386
C9	C10	1.488	1.388
C8	C7	1.478	1.383
C10	C11	1.459	1.381
C7	C6	1.479	1.382
C11	C6	1.475	1.383
C6	C5	1.507	1.507
C5	C2	1.556	1.530
C3	C2	1.574	1.530
C3	C4	1.530	1.508
C2	C1	1.466	1.507
C55	C4	1.462	1.382
C55	C54	1.456	1.382
C4	C51	1.440	1.383
C54	C53	1.465	1.382
C1	O1	1.225	1.208
C1	O2	1.365	1.342
C51	C52	1.443	1.382
C53	C52	1.439	1.382
C80	H1	1.100	1.090
C80	H2	1.100	1.090
C81	H3	1.100	1.090
C81	H4	1.100	1.089
C82	H5	1.100	1.090
C82	H6	1.100	1.090
C83	H7	1.099	1.090
C83	H8	1.100	1.090
C84	H9	1.100	1.090
C84	H10	1.100	1.091
C99	H11	1.080	1.080
C19	H12	1.079	1.080
C17	H13	1.080	1.080
C22	H14	1.080	1.080
N99	H15	1.000	0.970
C15	H16	1.100	1.090
C15	H17	1.100	1.090
C12	H18	1.101	1.090
C12	H19	1.100	1.090
C13	H20	1.100	1.090
C13	H21	1.100	1.089
C14	H22	1.100	1.090
C14	H23	1.100	1.090
C14	H24	1.100	1.091
C10	H25	1.080	1.080
C11	H26	1.080	1.080
C5	H27	1.099	1.089
C5	H28	1.100	1.090
C2	H29	1.100	1.090
C3	H30	1.100	1.090
C3	H31	1.100	1.090
C51	H32	1.080	1.080
C52	H33	1.081	1.080
C53	H34	1.080	1.080
C54	H35	1.080	1.080
C55	H36	1.080	1.080
C7	H37	1.080	1.079
O2	H38	0.950	0.967

Bond Angles for EK8

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C84	C83	H7	109.1	109.5
C84	C83	H8	109.1	109.5
C83	C84	H9	110.5	109.5
C83	C84	H10	110.5	109.5
C83	C82	H5	108.9	109.5
C83	C82	H6	108.8	109.5
C84	N89	C98	121.7	111.0
C82	C81	H3	109.6	109.5
C82	C81	H4	109.6	109.5
C14	C13	H20	109.7	109.4
C14	C13	H21	109.7	109.5
C80	N89	C98	123.7	111.0
N89	C98	C99	119.6	120.0
N89	C98	C19	122.2	119.9
N89	C80	H1	110.8	109.4
N89	C80	H2	110.8	109.5
C98	C99	C22	120.6	120.1
C98	C99	H11	119.7	120.0
C98	C19	C17	120.9	120.1
C98	C19	H12	119.5	119.9
C81	C80	H1	110.8	109.5
C81	C80	H2	110.8	109.5
C99	C22	C87	121.0	119.9
C22	C99	H11	119.7	119.9
C99	C22	H14	119.5	120.1
C19	C17	C87	120.4	119.9
C17	C19	H12	119.5	119.9
C19	C17	H13	119.9	120.0
C13	C12	H18	109.6	109.5
C13	C12	H19	109.6	109.5
C22	C87	C97	120.6	120.1
C17	C87	C97	120.4	120.1
C87	C17	H13	119.8	120.1
C87	C97	N99	112.8	120.0
O99	C97	N99	125.1	120.0
C97	N99	C15	122.8	120.0
C97	N99	H15	118.6	120.0
O3	C9	C10	121.8	120.0
N99	C15	C8	110.9	109.5
C15	N99	H15	118.6	120.0
N99	C15	H16	109.1	109.4
N99	C15	H17	109.1	109.5
C15	C8	C7	119.1	120.0
C8	C15	H16	109.1	109.5
C8	C15	H17	109.1	109.5
C9	C8	C7	119.7	120.0
C9	C10	C11	121.7	119.9
C9	C10	H25	119.1	120.0
C8	C7	C6	120.8	120.0
C8	C7	H37	119.6	120.0
C10	C11	C6	119.5	120.1
C11	C10	H25	119.2	120.1
C10	C11	H26	120.2	120.0
C11	C6	C5	121.6	120.0
C6	C11	H26	120.2	120.0
C6	C5	C2	115.9	109.4
C6	C5	H27	107.8	109.5
C6	C5	H28	107.8	109.4
C5	C2	C1	102.2	109.5
C2	C5	H27	107.8	109.5
C2	C5	H28	107.9	109.5
C5	C2	H29	108.5	109.5
C3	C2	C1	117.0	109.5
C3	C2	H29	108.3	109.5
C3	C4	C51	121.3	120.0
C4	C3	H30	107.7	109.5
C4	C3	H31	107.7	109.5
C2	C1	O1	124.5	120.0
C2	C1	O2	117.7	120.0
C1	C2	H29	109.7	109.5
C55	C54	H35	119.8	120.0
C4	C51	C52	122.1	120.0
C4	C51	H32	118.9	120.0
C54	C53	H34	120.2	120.0
O1	C1	O2	117.8	120.0
C1	O2	H38	109.5	117.0
C52	C51	H32	119.0	120.0
C51	C52	H33	120.2	120.0
C53	C52	H33	120.2	120.0
H1	C80	H2	109.5	109.4
H3	C81	H4	109.5	109.5
H5	C82	H6	109.5	109.5
H7	C83	H8	109.5	109.5
H9	C84	H10	109.4	109.4
H16	C15	H17	109.5	109.5
H18	C12	H19	109.4	109.5
H20	C13	H21	109.5	109.5
H22	C14	H23	109.4	109.5
H22	C14	H24	109.4	109.5
H23	C14	H24	109.5	109.5
H27	C5	H28	109.4	109.5
H30	C3	H31	109.5	109.5

Torsion Angles for EK8

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C84	C83	C82	H5	65.2	182.4
C84	C83	C82	H6	184.4	62.3
C83	C84	N89	C98	115.5	174.2
H7	C83	C84	H8	240.5	120.1
H9	C84	C83	H10	238.7	120.0
C83	C82	C81	H3	175.9	297.7
C83	C82	C81	H4	296.1	177.6
H5	C82	C83	H6	240.7	120.1
C80	N89	C84	C98	177.3	124.1
C84	N89	C98	C99	81.4	304.2
C84	N89	C98	C19	260.8	124.2
C84	N89	C80	H1	187.5	181.7
C84	N89	C80	H2	309.2	301.7
C82	C81	C80	H1	182.2	180.8
C82	C81	C80	H2	60.4	60.9
H3	C81	C82	H4	239.8	120.1
C14	C13	C12	H18	226.8	60.0
C14	C13	C12	H19	346.8	300.0
H20	C13	C14	H21	239.8	120.0
C98	N89	C80	H1	4.7	305.9
C98	N89	C80	H2	126.5	65.8
N89	C98	C99	C22	179.6	180.0
N89	C98	C99	H11	359.6	359.7
N89	C98	C19	C17	180.5	180.0
N89	C98	C19	H12	0.5	0.0
C84	N89	C80	C98	182.7	235.9
C80	N89	C98	C99	264.4	180.0
C80	N89	C98	C19	83.8	360.0
C81	C80	N89	H1	240.9	240.0
C81	C80	N89	H2	119.1	120.0
H1	C80	N89	H2	238.2	240.1
N89	C98	C99	C19	179.4	179.9
C98	C99	C22	C87	359.8	359.9
C22	C99	C98	H11	180.0	180.3
C98	C99	C22	H14	179.7	179.8
N89	C98	C19	C99	180.6	180.1
C19	C98	C99	C22	0.1	0.1
C19	C98	C99	H11	180.1	179.7
C98	C19	C17	C87	0.2	0.1
C17	C19	C98	H12	180.0	180.0
C98	C19	C17	H13	180.2	179.9
C81	C80	N89	C98	245.6	185.8
N89	C80	C81	H1	119.1	120.0
N89	C80	C81	H2	240.9	240.0
H1	C80	C81	H2	121.8	120.0
C98	C99	C22	H11	180.0	179.7
C99	C22	C87	C97	180.2	180.1
C98	C19	C17	H12	180.0	180.0
C19	C17	C87	C97	179.8	180.0
C87	C17	C19	H13	180.0	180.1
H18	C12	C13	H19	239.9	120.0
C87	C22	C99	H11	179.7	180.2
C99	C22	C87	H14	180.0	179.9
C17	C87	C22	C97	180.1	180.0
C22	C87	C17	H13	179.7	180.0
C22	C87	C97	N99	41.9	0.0
C99	C22	C87	C17	0.4	0.1
C87	C17	C19	H12	180.2	180.0
C19	C17	C87	H13	180.0	179.9
C22	C87	C17	C97	179.9	180.0
C17	C87	C97	N99	221.8	180.0
C97	C87	C17	H13	359.8	0.1
O99	C97	C87	N99	180.1	180.0
C87	C97	N99	C15	180.2	180.0
C87	C97	N99	H15	0.2	0.0
C87	C97	O99	N99	179.9	180.0
O99	C97	N99	C15	0.1	0.0
O99	C97	N99	H15	180.1	180.0
C12	O3	C9	C10	294.9	0.0
C97	N99	C15	C8	180.2	180.0
C15	N99	C97	H15	180.0	180.0
C97	N99	C15	H16	300.4	300.0
C97	N99	C15	H17	60.0	60.0
O3	C9	C8	C7	180.1	180.3
O3	C9	C10	C11	180.0	180.0
O3	C9	C10	H25	0.0	360.0
C97	N99	C15	H15	180.0	180.0
N99	C15	C8	C7	114.0	260.0
C8	C15	N99	H16	239.8	240.0
C8	C15	N99	H17	120.3	120.0
H16	C15	N99	H17	240.4	240.0
C8	C15	N99	H15	0.2	0.0
N99	C15	C8	H16	120.2	120.0
N99	C15	C8	H17	239.8	240.0
C9	C8	C15	C7	180.1	180.3
C15	C8	C7	C6	180.0	179.7
C15	C8	C7	H37	0.0	360.0
H16	C15	C8	H17	119.6	120.0
C15	C8	C9	C7	179.9	179.7
C9	C8	C15	H16	173.8	320.3
C9	C8	C15	H17	54.3	200.3
C9	C8	C7	C6	359.9	359.4
C9	C8	C7	H37	180.0	179.7
C10	C9	C8	C7	0.1	0.3
C9	C10	C11	C6	359.9	0.0
C11	C10	C9	H25	180.0	180.0
C9	C10	C11	H26	179.9	180.1
C7	C8	C15	H16	353.7	140.0
C7	C8	C15	H17	234.2	20.0
C9	C10	C11	H25	180.0	180.0
C10	C11	C6	C5	180.4	180.0
C6	C11	C10	H26	180.0	179.9
C8	C7	C6	H37	180.0	180.3
C7	C6	C11	H26	180.2	179.7
C7	C6	C5	H27	343.0	24.4
C7	C6	C5	H28	101.1	144.4
C8	C7	C6	C11	359.9	0.5
C6	C11	C10	H25	179.9	180.0
C10	C11	C6	H26	180.0	180.1
C11	C6	C5	C2	41.9	84.2
C11	C6	C5	H27	162.8	204.2
C11	C6	C5	H28	280.9	324.2
C8	C7	C6	C5	179.7	180.3
C5	C6	C11	H26	0.4	359.9
C6	C5	C2	C1	202.4	185.8
C2	C5	C6	H27	239.1	240.0
C2	C5	C6	H28	121.0	120.0
C6	C5	C2	H29	318.3	305.8
H27	C5	C6	H28	241.9	240.0
C6	C5	C2	H27	120.9	120.0
C6	C5	C2	H28	239.0	240.1
C3	C2	C5	C1	234.7	240.0
C3	C2	C5	H29	118.8	120.0
C5	C2	C1	O1	59.4	323.9
C5	C2	C1	O2	239.3	143.9
C1	C2	C5	H29	244.1	240.0
H27	C5	C2	H28	118.1	120.1
C5	C2	C3	C1	116.5	120.0
C3	C2	C5	H27	316.1	305.8
C3	C2	C5	H28	198.0	185.8
C5	C2	C3	H29	241.1	239.9
C3	C2	C1	O1	180.5	83.9
C3	C2	C1	O2	0.4	263.9
C1	C2	C3	H29	124.6	120.0
C4	C3	C2	C1	64.2	65.0
C4	C3	C2	H29	299.6	305.0
C3	C4	C51	C52	179.6	180.0
C3	C4	C51	H32	359.6	360.0
H30	C3	C4	H31	118.0	120.0
C1	C2	C5	H27	81.5	65.8
C1	C2	C5	H28	323.4	305.7
C5	C2	C1	H29	115.0	120.0
C3	C2	C1	H29	236.1	240.0
O1	C1	C2	O2	180.1	180.1
C2	C1	O2	H38	180.1	180.0
C55	C4	C3	H30	316.4	149.8
C55	C4	C3	H31	198.4	29.8
C55	C4	C51	H32	179.7	180.2
C55	C54	C53	H34	180.4	179.7
C51	C4	C3	H30	136.5	330.0
C51	C4	C3	H31	18.5	210.0
C52	C51	C4	H32	180.0	180.0
C4	C51	C52	H33	180.3	180.0
C54	C53	C52	H33	179.7	180.0
C2	C1	O1	O2	179.9	179.9
O1	C1	C2	H29	304.4	203.9
O1	C1	O2	H38	360.0	360.0
C2	C1	O2	O1	180.1	180.1
O2	C1	C2	H29	124.3	23.9
C4	C51	C52	H32	180.0	180.0
C53	C52	C51	H33	180.0	179.9
C53	C52	C51	H32	180.3	180.0
C51	C52	C53	H33	180.0	180.1
H1	C80	N89	C98	4.7	305.9
N89	C80	H1	H2	122.5	119.9
C81	C80	H1	H2	237.4	240.0
H2	C80	N89	C98	126.5	65.8
N89	C80	H2	H1	237.5	240.1
C81	C80	H2	H1	122.6	120.0
C82	C81	H3	H4	120.3	239.9
H3	C81	C80	H1	62.3	300.7
H3	C81	C80	H2	300.5	180.8
C82	C81	H4	H3	239.7	120.1
H4	C81	C80	H1	302.1	60.8
H4	C81	C80	H2	180.3	300.8
C83	C82	H5	H6	118.9	239.9
H5	C82	C81	H3	55.5	57.6
H5	C82	C81	H4	175.7	297.6
C83	C82	H6	H5	241.1	120.1
H6	C82	C81	H3	296.2	177.7
H6	C82	C81	H4	56.4	57.7
C84	C83	H7	H8	119.3	240.0
H7	C83	C84	H9	296.0	179.2
H7	C83	C84	H10	57.3	59.2
H7	C83	C82	H5	304.9	302.4
H7	C83	C82	H6	64.2	182.2
C84	C83	H8	H7	240.7	120.0
H8	C83	C84	H9	55.5	59.1
H8	C83	C84	H10	176.8	299.1
H8	C83	C82	H5	185.4	62.5
H8	C83	C82	H6	304.6	302.4
H9	C84	C83	H7	296.0	179.2
H9	C84	C83	H8	55.5	59.1
C83	C84	H9	H10	121.9	240.0
H9	C84	N89	C98	356.1	294.2
H10	C84	C83	H7	57.3	59.2
H10	C84	C83	H8	176.8	299.1
C83	C84	H10	H9	238.1	120.0
H10	C84	N89	C98	234.8	54.1
C98	C99	H11	C22	180.0	180.3
H11	C99	C22	C87	179.7	180.2
H11	C99	C22	H14	359.7	0.1
C98	C19	H12	C17	180.0	180.0
H12	C19	C17	C87	180.2	180.0
H12	C19	C17	H13	0.2	359.9
C19	C17	H13	C87	180.0	180.1
H13	C17	C19	H12	0.2	359.9
H13	C17	C87	C97	359.8	0.1
C99	C22	H14	C87	180.0	180.1
H14	C22	C99	H11	359.7	0.1
H14	C22	C87	C97	0.3	0.2
C97	N99	H15	C15	180.0	180.0
H15	N99	C15	C8	0.2	0.0
H15	N99	C15	H16	120.4	120.0
H15	N99	C15	H17	239.9	240.0
N99	C15	H16	C8	238.7	240.0
H16	C15	N99	H15	120.4	120.0
N99	C15	H16	H17	119.3	120.0
H16	C15	C8	C7	353.7	140.0
C8	C15	H16	H17	240.7	240.0
N99	C15	H17	C8	121.4	120.0
H17	C15	N99	H15	239.9	240.0
N99	C15	H17	H16	240.7	240.0
H17	C15	C8	C7	234.2	20.0
C8	C15	H17	H16	119.3	120.0
C13	C12	H18	H19	120.1	240.0
C13	C12	H19	H18	239.9	120.0
C14	C13	H20	H21	120.4	240.0
H20	C13	C12	H18	106.9	180.0
H20	C13	C12	H19	226.9	60.0
C14	C13	H21	H20	239.6	120.0
H21	C13	C12	H18	346.6	300.0
H21	C13	C12	H19	106.7	180.0
H22	C14	C13	H20	299.9	180.0
H22	C14	C13	H21	60.1	60.0
H23	C14	H22	H24	120.0	120.0
H23	C14	C13	H20	59.9	300.0
H23	C14	C13	H21	180.1	180.0
H22	C14	H23	H24	240.1	240.0
H24	C14	C13	H20	179.9	60.1
H24	C14	C13	H21	300.1	300.0
H22	C14	H24	H23	119.9	120.0
C9	C10	H25	C11	180.0	180.0
H25	C10	C11	C6	179.9	180.0
H25	C10	C11	H26	359.9	0.1
C10	C11	H26	C6	180.0	179.9
H26	C11	C10	H25	359.9	0.1
H26	C11	C6	C5	0.4	359.9
C6	C5	H27	C2	234.1	240.0
C6	C5	H27	H28	117.1	119.9
H27	C5	C2	C1	81.5	65.8
C2	C5	H27	H28	242.9	239.9
H27	C5	C2	H29	197.3	185.8
C6	C5	H28	C2	125.9	119.9
C6	C5	H28	H27	243.0	240.0
H28	C5	C2	C1	323.4	305.7
C2	C5	H28	H27	117.1	120.1
H28	C5	C2	H29	79.2	65.7
C5	C2	H29	C1	249.1	240.0
H29	C2	C5	H27	197.3	185.8
H29	C2	C5	H28	79.2	65.7
C3	C2	H29	C1	128.8	120.0
H29	C2	C1	O1	304.4	203.9
H29	C2	C1	O2	124.3	23.9
H30	C3	C2	C1	185.2	185.0
H30	C3	C2	H29	60.6	65.0
H30	C3	C4	C51	136.5	330.0
C4	C3	H30	H31	243.1	240.0
H31	C3	C2	C1	303.2	305.0
H31	C3	C2	H29	178.6	185.0
H31	C3	C4	C51	18.5	210.0
C4	C3	H31	H30	116.9	120.0
C4	C51	H32	C52	180.0	180.0
H32	C51	C52	H33	0.3	0.1
H33	C52	C51	H32	0.3	0.1
H34	C53	C52	H33	359.7	359.9
H35	C54	C53	H34	0.3	360.0
H36	C55	C54	H35	359.6	0.0
C8	C7	H37	C6	180.0	179.7