PDB Chemical Component EK4
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for EK4
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C6 |
C5 |
1.387 |
1.379 |
| C6 |
C7 |
1.385 |
1.383 |
| C5 |
C4 |
1.392 |
1.394 |
| C7 |
C2 |
1.391 |
1.383 |
| O2 |
C17 |
1.420 |
1.429 |
| C4 |
C8 |
1.487 |
1.483 |
| C4 |
C3 |
1.394 |
1.394 |
| F1 |
C1 |
1.322 |
1.399 |
| C2 |
C3 |
1.393 |
1.380 |
| C2 |
C1 |
1.501 |
1.507 |
| C9 |
C8 |
1.401 |
1.407 |
| C9 |
N1 |
1.325 |
1.306 |
| C8 |
C10 |
1.465 |
1.388 |
| C17 |
C16 |
1.524 |
1.530 |
| C1 |
F3 |
1.307 |
1.399 |
| C1 |
F2 |
1.325 |
1.399 |
| N1 |
N2 |
1.361 |
1.400 |
| C10 |
N2 |
1.352 |
1.362 |
| C10 |
C11 |
1.404 |
1.478 |
| C12 |
C11 |
1.430 |
1.410 |
| C12 |
C13 |
1.379 |
1.365 |
| N4 |
C16 |
1.461 |
1.465 |
| N4 |
C15 |
1.342 |
1.348 |
| C16 |
C18 |
1.514 |
1.507 |
| C11 |
C14 |
1.377 |
1.378 |
| C13 |
C15 |
1.494 |
1.467 |
| C13 |
N3 |
1.372 |
1.377 |
| C15 |
O1 |
1.233 |
1.217 |
| C18 |
C23 |
1.389 |
1.383 |
| C18 |
C19 |
1.387 |
1.382 |
| C14 |
N3 |
1.363 |
1.349 |
| C23 |
C22 |
1.385 |
1.382 |
| C19 |
C20 |
1.385 |
1.382 |
| C22 |
C21 |
1.376 |
1.382 |
| C20 |
C21 |
1.378 |
1.383 |
| N4 |
H11 |
1.000 |
0.971 |
| C16 |
H3 |
1.100 |
1.089 |
| C23 |
H19 |
1.080 |
1.080 |
| C22 |
H18 |
1.080 |
1.081 |
| C21 |
H17 |
1.080 |
1.080 |
| C20 |
H16 |
1.080 |
1.080 |
| C19 |
H15 |
1.080 |
1.080 |
| C17 |
H12 |
1.099 |
1.090 |
| C17 |
H13 |
1.099 |
1.090 |
| O2 |
H14 |
0.950 |
0.967 |
| C12 |
H9 |
1.080 |
1.081 |
| N3 |
H2 |
1.000 |
0.969 |
| C14 |
H10 |
1.080 |
1.080 |
| N2 |
H1 |
1.000 |
0.970 |
| C9 |
H8 |
1.079 |
1.080 |
| C3 |
H4 |
1.080 |
1.080 |
| C5 |
H5 |
1.081 |
1.080 |
| C6 |
H6 |
1.080 |
1.080 |
| C7 |
H7 |
1.080 |
1.080 |
Bond Angles for EK4
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
C5 |
H5 |
119.9 |
120.1 |
| C6 |
C7 |
C2 |
120.5 |
120.3 |
| C7 |
C6 |
H6 |
119.9 |
119.9 |
| C6 |
C7 |
H7 |
119.8 |
119.9 |
| C7 |
C2 |
C1 |
120.9 |
119.9 |
| C2 |
C7 |
H7 |
119.7 |
119.9 |
| O2 |
C17 |
H12 |
108.9 |
109.5 |
| O2 |
C17 |
H13 |
108.9 |
109.5 |
| C4 |
C3 |
H4 |
119.5 |
120.0 |
| F1 |
C1 |
F3 |
104.9 |
109.5 |
| F1 |
C1 |
F2 |
105.9 |
109.5 |
| C2 |
C3 |
H4 |
119.5 |
120.1 |
| C2 |
C1 |
F3 |
112.8 |
109.4 |
| C2 |
C1 |
F2 |
113.5 |
109.4 |
| C8 |
C9 |
H8 |
123.6 |
125.7 |
| C17 |
C16 |
H3 |
108.9 |
109.5 |
| F2 |
C1 |
F3 |
105.2 |
109.5 |
| N1 |
N2 |
H1 |
123.5 |
125.9 |
| C10 |
N2 |
H1 |
123.4 |
125.9 |
| C12 |
C11 |
C14 |
104.8 |
107.2 |
| C11 |
C12 |
H9 |
126.5 |
126.4 |
| C12 |
C13 |
N3 |
110.1 |
108.2 |
| N4 |
C16 |
C18 |
112.9 |
109.5 |
| C16 |
N4 |
H11 |
118.8 |
120.0 |
| N4 |
C16 |
H3 |
109.7 |
109.5 |
| C16 |
C18 |
C23 |
120.7 |
120.0 |
| C16 |
C18 |
C19 |
120.2 |
120.0 |
| C18 |
C16 |
H3 |
109.1 |
109.5 |
| C11 |
C14 |
H10 |
124.0 |
125.8 |
| C13 |
N3 |
H2 |
126.9 |
125.5 |
| C23 |
C18 |
C19 |
118.5 |
120.0 |
| C18 |
C23 |
C22 |
120.7 |
120.0 |
| C18 |
C23 |
H19 |
119.6 |
120.0 |
| C18 |
C19 |
C20 |
120.6 |
120.0 |
| C18 |
C19 |
H15 |
119.7 |
120.0 |
| C14 |
N3 |
H2 |
127.0 |
125.5 |
| C23 |
C22 |
C21 |
120.1 |
120.0 |
| C22 |
C23 |
H19 |
119.7 |
120.0 |
| C23 |
C22 |
H18 |
119.9 |
120.0 |
| C19 |
C20 |
H16 |
119.9 |
120.0 |
| C21 |
C22 |
H18 |
119.9 |
120.0 |
| C22 |
C21 |
H17 |
120.1 |
120.0 |
| C20 |
C21 |
H17 |
120.2 |
120.0 |
| H12 |
C17 |
H13 |
109.5 |
109.5 |
Torsion Angles for EK4
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C7 |
C6 |
C5 |
H5 |
179.4 |
180.0 |
| C6 |
C7 |
C2 |
C1 |
185.1 |
180.0 |
| C2 |
C7 |
C6 |
H7 |
180.0 |
180.3 |
| C5 |
C4 |
C3 |
H4 |
181.5 |
180.2 |
| C2 |
C7 |
C6 |
H6 |
180.3 |
180.2 |
| C6 |
C7 |
C2 |
H7 |
180.0 |
179.7 |
| C7 |
C2 |
C3 |
H4 |
178.2 |
180.0 |
| C7 |
C2 |
C1 |
F3 |
119.6 |
360.0 |
| C7 |
C2 |
C1 |
F2 |
239.0 |
240.0 |
| O2 |
C17 |
C16 |
H3 |
288.5 |
175.0 |
| H12 |
C17 |
O2 |
H13 |
240.6 |
120.0 |
| C4 |
C8 |
C9 |
H8 |
357.8 |
359.7 |
| C2 |
C3 |
C4 |
H4 |
180.0 |
180.0 |
| C2 |
C1 |
F1 |
F3 |
123.7 |
240.0 |
| C2 |
C1 |
F1 |
F2 |
234.6 |
119.9 |
| F2 |
C1 |
F1 |
F3 |
249.1 |
120.1 |
| C4 |
C3 |
C2 |
H4 |
180.0 |
180.0 |
| C1 |
C2 |
C7 |
H7 |
5.1 |
0.3 |
| F1 |
C1 |
C2 |
F3 |
240.7 |
120.0 |
| F1 |
C1 |
C2 |
F2 |
121.2 |
240.0 |
| C1 |
C2 |
C3 |
H4 |
354.0 |
359.8 |
| F2 |
C1 |
C2 |
F3 |
119.4 |
240.0 |
| C9 |
N1 |
N2 |
H1 |
181.7 |
180.0 |
| C8 |
C10 |
N2 |
H1 |
177.8 |
180.2 |
| C17 |
C16 |
N4 |
H11 |
9.8 |
95.0 |
| N4 |
C16 |
C17 |
H3 |
119.8 |
120.0 |
| C18 |
C16 |
C17 |
H3 |
242.3 |
240.0 |
| F1 |
C1 |
F3 |
F2 |
248.6 |
120.1 |
| C2 |
C1 |
F3 |
F2 |
124.2 |
240.0 |
| F1 |
C1 |
F2 |
F3 |
110.7 |
239.9 |
| C2 |
C1 |
F2 |
F3 |
236.3 |
119.9 |
| C10 |
N2 |
N1 |
H1 |
180.0 |
180.0 |
| N1 |
N2 |
C10 |
H1 |
180.0 |
180.0 |
| C10 |
C11 |
C12 |
H9 |
3.3 |
360.0 |
| C10 |
C11 |
C14 |
H10 |
356.1 |
0.1 |
| C11 |
C12 |
C13 |
N3 |
2.2 |
0.2 |
| C12 |
C11 |
C14 |
H10 |
181.3 |
180.1 |
| C12 |
C13 |
N3 |
H2 |
178.6 |
179.7 |
| C17 |
C16 |
N4 |
H3 |
240.7 |
240.0 |
| N4 |
C16 |
C18 |
C23 |
35.6 |
220.0 |
| N4 |
C16 |
C18 |
C19 |
206.0 |
39.7 |
| C18 |
C16 |
N4 |
H3 |
121.9 |
120.0 |
| C17 |
C16 |
C18 |
H3 |
117.6 |
120.0 |
| C18 |
C16 |
N4 |
H11 |
251.1 |
335.0 |
| N4 |
C16 |
C18 |
H3 |
237.7 |
240.0 |
| C23 |
C18 |
C16 |
C19 |
189.6 |
180.2 |
| C16 |
C18 |
C23 |
C22 |
166.3 |
180.0 |
| C16 |
C18 |
C23 |
H19 |
346.4 |
0.0 |
| C16 |
C18 |
C19 |
C20 |
192.9 |
179.8 |
| C16 |
C18 |
C19 |
H15 |
12.9 |
0.0 |
| C14 |
C11 |
C12 |
H9 |
178.0 |
179.9 |
| C11 |
C14 |
N3 |
H2 |
180.0 |
180.2 |
| C14 |
N3 |
C13 |
H2 |
180.0 |
180.1 |
| C16 |
C18 |
C23 |
C19 |
170.5 |
179.8 |
| C23 |
C18 |
C16 |
H3 |
157.9 |
340.0 |
| C23 |
C18 |
C19 |
C20 |
3.4 |
359.5 |
| C23 |
C18 |
C19 |
H15 |
183.5 |
179.8 |
| C18 |
C23 |
C22 |
C21 |
1.5 |
0.0 |
| C22 |
C23 |
C18 |
H19 |
180.0 |
180.0 |
| C18 |
C23 |
C22 |
H18 |
181.5 |
180.0 |
| C16 |
C18 |
C19 |
C23 |
189.4 |
180.2 |
| C19 |
C18 |
C16 |
H3 |
328.3 |
159.8 |
| C19 |
C18 |
C23 |
C22 |
355.8 |
0.2 |
| C19 |
C18 |
C23 |
H19 |
175.8 |
180.3 |
| C18 |
C19 |
C20 |
H16 |
180.0 |
180.3 |
| C12 |
C11 |
C14 |
N3 |
1.3 |
0.0 |
| C13 |
N3 |
C14 |
H2 |
180.0 |
179.9 |
| C22 |
C23 |
C18 |
C19 |
355.8 |
0.2 |
| C18 |
C23 |
C22 |
H19 |
180.0 |
180.0 |
| C21 |
C22 |
C23 |
H18 |
180.0 |
180.0 |
| C23 |
C22 |
C21 |
H17 |
182.0 |
180.0 |
| C18 |
C19 |
C20 |
H15 |
180.0 |
180.3 |
| C19 |
C20 |
C21 |
H17 |
177.2 |
179.8 |
| C21 |
C22 |
C23 |
H19 |
181.5 |
180.0 |
| C23 |
C22 |
C21 |
H18 |
180.0 |
180.0 |
| C20 |
C21 |
C22 |
H17 |
180.0 |
180.0 |
| C18 |
C19 |
C20 |
C21 |
360.0 |
0.5 |
| C20 |
C21 |
C22 |
H18 |
182.0 |
180.0 |
| C22 |
C21 |
C20 |
H17 |
180.0 |
180.0 |
| H11 |
N4 |
C16 |
C18 |
251.1 |
335.0 |
| H11 |
N4 |
C16 |
H3 |
129.2 |
215.0 |
| N4 |
C16 |
H3 |
C18 |
124.2 |
120.0 |
| H3 |
C16 |
N4 |
H11 |
129.2 |
215.0 |
| H3 |
C16 |
C18 |
C23 |
157.9 |
340.0 |
| H3 |
C16 |
C18 |
C19 |
328.3 |
159.8 |
| H19 |
C23 |
C18 |
C19 |
175.8 |
180.3 |
| C18 |
C23 |
H19 |
C22 |
180.0 |
180.0 |
| H19 |
C23 |
C22 |
C21 |
181.5 |
180.0 |
| H19 |
C23 |
C22 |
H18 |
1.5 |
360.0 |
| C23 |
C22 |
H18 |
C21 |
180.0 |
180.0 |
| H18 |
C22 |
C23 |
H19 |
1.5 |
360.0 |
| H18 |
C22 |
C21 |
H17 |
2.0 |
360.0 |
| H17 |
C21 |
C22 |
H18 |
2.0 |
360.0 |
| H16 |
C20 |
C21 |
H17 |
357.2 |
360.0 |
| C18 |
C19 |
H15 |
C20 |
180.0 |
179.7 |
| H15 |
C19 |
C20 |
H16 |
360.0 |
360.0 |
| O2 |
C17 |
H12 |
H13 |
119.0 |
240.0 |
| H12 |
C17 |
C16 |
H3 |
168.2 |
295.0 |
| O2 |
C17 |
H13 |
H12 |
241.0 |
120.0 |
| H13 |
C17 |
C16 |
H3 |
48.8 |
55.0 |
| H14 |
O2 |
C17 |
H12 |
300.3 |
60.0 |
| H14 |
O2 |
C17 |
H13 |
59.7 |
300.0 |
| H9 |
C12 |
C11 |
C14 |
178.0 |
179.9 |
| H9 |
C12 |
C13 |
N3 |
182.2 |
180.2 |
| H10 |
C14 |
N3 |
H2 |
360.0 |
0.1 |
| H6 |
C6 |
C5 |
H5 |
359.4 |
0.0 |
| H6 |
C6 |
C7 |
C2 |
180.3 |
180.2 |
| H6 |
C6 |
C7 |
H7 |
0.2 |
360.0 |
| C6 |
C7 |
H7 |
C2 |
180.0 |
180.3 |
| H7 |
C7 |
C6 |
H6 |
0.2 |
360.0 |
| H7 |
C7 |
C2 |
C1 |
5.1 |
0.3 |