PDB Chemical Component EJS
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for EJS
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C27 |
C28 |
1.388 |
1.382 |
| C27 |
C25 |
1.389 |
1.383 |
| F26 |
C25 |
1.363 |
1.352 |
| C28 |
C10 |
1.384 |
1.385 |
| C25 |
C12 |
1.383 |
1.398 |
| C34 |
N35 |
1.322 |
1.341 |
| C34 |
C33 |
1.434 |
1.382 |
| N35 |
N36 |
1.344 |
1.399 |
| O01 |
C02 |
1.185 |
1.213 |
| C10 |
C09 |
1.544 |
1.507 |
| C10 |
C11 |
1.386 |
1.379 |
| C12 |
C11 |
1.385 |
1.397 |
| C12 |
C13 |
1.533 |
1.476 |
| C33 |
C32 |
1.409 |
1.412 |
| C33 |
C37 |
1.372 |
1.471 |
| O24 |
C13 |
1.184 |
1.217 |
| C09 |
N08 |
1.501 |
1.464 |
| C09 |
C03 |
1.495 |
1.532 |
| N36 |
C37 |
1.346 |
1.321 |
| C32 |
C31 |
1.390 |
1.362 |
| C02 |
C03 |
1.524 |
1.507 |
| C02 |
N30 |
1.453 |
1.348 |
| C37 |
C38 |
1.417 |
1.412 |
| C13 |
N14 |
1.458 |
1.347 |
| N08 |
C07 |
1.495 |
1.341 |
| C03 |
C04 |
1.474 |
1.533 |
| C31 |
N30 |
1.447 |
1.401 |
| C31 |
C39 |
1.397 |
1.402 |
| C38 |
C39 |
1.389 |
1.355 |
| N14 |
C15 |
1.457 |
1.465 |
| C07 |
O29 |
1.183 |
1.216 |
| C07 |
N06 |
1.483 |
1.341 |
| C21 |
O20 |
1.397 |
1.429 |
| C04 |
N06 |
1.429 |
1.464 |
| C04 |
C05 |
1.532 |
1.530 |
| C15 |
C16 |
1.535 |
1.508 |
| N17 |
C16 |
1.337 |
1.311 |
| N17 |
C18 |
1.354 |
1.345 |
| O20 |
C19 |
1.401 |
1.429 |
| C16 |
O23 |
1.324 |
1.336 |
| C19 |
C18 |
1.530 |
1.507 |
| C18 |
N22 |
1.327 |
1.299 |
| O23 |
N22 |
1.334 |
1.213 |
| C03 |
H1 |
1.100 |
1.090 |
| C04 |
H2 |
1.100 |
1.090 |
| C05 |
H3 |
1.100 |
1.091 |
| C05 |
H4 |
1.100 |
1.090 |
| C05 |
H5 |
1.100 |
1.090 |
| N06 |
H6 |
1.000 |
0.971 |
| N08 |
H7 |
1.000 |
0.970 |
| C09 |
H8 |
1.099 |
1.090 |
| C11 |
H9 |
1.080 |
1.080 |
| N14 |
H10 |
1.000 |
0.970 |
| C15 |
H11 |
1.100 |
1.089 |
| C15 |
H12 |
1.100 |
1.090 |
| C19 |
H13 |
1.100 |
1.090 |
| C19 |
H14 |
1.100 |
1.090 |
| C21 |
H15 |
1.100 |
1.090 |
| C21 |
H16 |
1.100 |
1.089 |
| C21 |
H17 |
1.100 |
1.091 |
| C27 |
H18 |
1.081 |
1.079 |
| C28 |
H19 |
1.080 |
1.080 |
| N30 |
H20 |
1.001 |
0.970 |
| C32 |
H21 |
1.080 |
1.080 |
| C34 |
H22 |
1.080 |
1.080 |
| N35 |
H23 |
1.000 |
0.970 |
| C38 |
H24 |
1.080 |
1.080 |
| C39 |
H25 |
1.080 |
1.080 |
Bond Angles for EJS
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C28 |
C27 |
H18 |
120.0 |
120.0 |
| C27 |
C28 |
H19 |
120.1 |
119.8 |
| C34 |
N35 |
N36 |
108.3 |
110.0 |
| N35 |
C34 |
H22 |
125.9 |
126.1 |
| C34 |
N35 |
H23 |
125.8 |
125.0 |
| C34 |
C33 |
C37 |
105.3 |
106.5 |
| N35 |
N36 |
C37 |
110.5 |
108.9 |
| N36 |
N35 |
H23 |
125.9 |
125.0 |
| O01 |
C02 |
C03 |
120.9 |
120.0 |
| O01 |
C02 |
N30 |
123.3 |
120.0 |
| C10 |
C09 |
H8 |
108.2 |
109.6 |
| C10 |
C11 |
H9 |
119.9 |
120.1 |
| C12 |
C11 |
H9 |
120.0 |
120.1 |
| C12 |
C13 |
N14 |
119.9 |
120.1 |
| C33 |
C32 |
H21 |
119.9 |
120.3 |
| C33 |
C37 |
N36 |
107.6 |
106.8 |
| C33 |
C37 |
C38 |
120.1 |
118.7 |
| C09 |
N08 |
H7 |
121.2 |
119.3 |
| C09 |
C03 |
H1 |
97.8 |
109.8 |
| N36 |
C37 |
C38 |
132.3 |
134.5 |
| C32 |
C31 |
C39 |
120.0 |
121.6 |
| C03 |
C02 |
N30 |
115.8 |
120.0 |
| C02 |
C03 |
C04 |
113.7 |
109.6 |
| C02 |
C03 |
H1 |
97.7 |
109.6 |
| C02 |
N30 |
H20 |
117.9 |
120.0 |
| C37 |
C38 |
C39 |
120.0 |
119.7 |
| C37 |
C38 |
H24 |
120.0 |
120.2 |
| C13 |
N14 |
C15 |
119.7 |
120.0 |
| C13 |
N14 |
H10 |
120.2 |
120.0 |
| N08 |
C07 |
O29 |
119.4 |
118.7 |
| C03 |
C04 |
N06 |
119.8 |
109.1 |
| C03 |
C04 |
C05 |
119.9 |
109.5 |
| C04 |
C03 |
H1 |
97.9 |
109.6 |
| C03 |
C04 |
H2 |
94.9 |
109.5 |
| C31 |
N30 |
H20 |
117.9 |
120.0 |
| C31 |
C39 |
C38 |
119.8 |
121.8 |
| C31 |
C39 |
H25 |
120.1 |
119.1 |
| C39 |
C38 |
H24 |
120.0 |
120.2 |
| C38 |
C39 |
H25 |
120.1 |
119.1 |
| N14 |
C15 |
C16 |
111.2 |
109.5 |
| C15 |
N14 |
H10 |
120.2 |
120.0 |
| N14 |
C15 |
H11 |
109.0 |
109.5 |
| N14 |
C15 |
H12 |
109.0 |
109.5 |
| C07 |
N06 |
H6 |
119.9 |
119.4 |
| C05 |
C04 |
N06 |
118.2 |
109.5 |
| N06 |
C04 |
H2 |
95.0 |
109.5 |
| C04 |
N06 |
H6 |
119.9 |
119.3 |
| C05 |
C04 |
H2 |
94.7 |
109.6 |
| C04 |
C05 |
H3 |
109.5 |
109.4 |
| C04 |
C05 |
H4 |
109.5 |
109.5 |
| C04 |
C05 |
H5 |
109.4 |
109.5 |
| C15 |
C16 |
O23 |
125.7 |
126.6 |
| C16 |
C15 |
H11 |
109.1 |
109.5 |
| C16 |
C15 |
H12 |
109.1 |
109.4 |
| N17 |
C16 |
O23 |
107.8 |
106.9 |
| N17 |
C18 |
N22 |
107.8 |
107.4 |
| O20 |
C19 |
H13 |
109.9 |
109.5 |
| O20 |
C19 |
H14 |
109.9 |
109.5 |
| C16 |
O23 |
N22 |
109.0 |
109.8 |
| C19 |
C18 |
N22 |
125.5 |
126.3 |
| H3 |
C05 |
H4 |
109.4 |
109.5 |
| H3 |
C05 |
H5 |
109.5 |
109.4 |
| H4 |
C05 |
H5 |
109.5 |
109.5 |
| H11 |
C15 |
H12 |
109.4 |
109.5 |
| H13 |
C19 |
H14 |
109.5 |
109.5 |
| H15 |
C21 |
H16 |
109.5 |
109.5 |
| H15 |
C21 |
H17 |
109.5 |
109.4 |
| H16 |
C21 |
H17 |
109.4 |
109.4 |
Torsion Angles for EJS
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C28 |
C10 |
C09 |
H8 |
327.2 |
159.9 |
| C28 |
C10 |
C11 |
H9 |
180.1 |
180.3 |
| C25 |
C12 |
C11 |
H9 |
180.1 |
180.0 |
| N35 |
C34 |
C33 |
C37 |
359.9 |
0.0 |
| C34 |
N35 |
N36 |
C37 |
359.9 |
360.0 |
| N36 |
N35 |
C34 |
H23 |
180.0 |
179.9 |
| C34 |
C33 |
C32 |
H21 |
1.3 |
359.9 |
| C34 |
C33 |
C37 |
N36 |
0.0 |
360.0 |
| C34 |
C33 |
C37 |
C38 |
180.0 |
180.1 |
| N36 |
N35 |
C34 |
H22 |
180.1 |
180.0 |
| C34 |
N35 |
N36 |
H23 |
180.0 |
180.1 |
| C33 |
C37 |
N36 |
N35 |
0.1 |
0.0 |
| N35 |
N36 |
C37 |
C38 |
180.0 |
179.9 |
| C03 |
C02 |
O01 |
N30 |
181.4 |
180.2 |
| O01 |
C02 |
C03 |
C04 |
123.1 |
85.5 |
| O01 |
C02 |
C03 |
H1 |
225.2 |
205.8 |
| O01 |
C02 |
N30 |
H20 |
177.9 |
185.4 |
| C10 |
C09 |
N08 |
H7 |
54.0 |
89.3 |
| C10 |
C09 |
C03 |
H1 |
29.0 |
304.6 |
| C11 |
C10 |
C09 |
H8 |
147.3 |
340.2 |
| C12 |
C11 |
C10 |
H9 |
180.0 |
180.0 |
| C10 |
C11 |
C12 |
H9 |
180.0 |
180.0 |
| C13 |
C12 |
C11 |
H9 |
359.7 |
0.0 |
| C12 |
C13 |
N14 |
C15 |
180.4 |
180.0 |
| C12 |
C13 |
N14 |
H10 |
0.4 |
359.9 |
| C33 |
C32 |
C31 |
C39 |
357.3 |
0.3 |
| N35 |
N36 |
C37 |
C33 |
0.1 |
0.0 |
| C37 |
C33 |
C32 |
H21 |
181.5 |
180.0 |
| N36 |
C37 |
C33 |
C38 |
180.0 |
179.9 |
| C33 |
C37 |
C38 |
C39 |
0.0 |
359.7 |
| C33 |
C37 |
C38 |
H24 |
180.0 |
179.9 |
| O24 |
C13 |
N14 |
H10 |
180.2 |
180.0 |
| N08 |
C09 |
C03 |
H1 |
270.1 |
184.7 |
| C09 |
N08 |
C07 |
O29 |
179.8 |
179.4 |
| C09 |
C03 |
C02 |
N30 |
150.2 |
146.6 |
| C02 |
C03 |
C09 |
H1 |
256.4 |
239.6 |
| C04 |
C03 |
C09 |
H1 |
104.1 |
119.8 |
| C09 |
C03 |
C04 |
H2 |
246.6 |
295.6 |
| C37 |
N36 |
N35 |
H23 |
179.9 |
179.9 |
| C33 |
C37 |
N36 |
C38 |
180.0 |
180.1 |
| N36 |
C37 |
C38 |
C39 |
180.1 |
179.7 |
| N36 |
C37 |
C38 |
H24 |
0.0 |
0.0 |
| C32 |
C31 |
N30 |
H20 |
154.5 |
323.9 |
| C32 |
C31 |
C39 |
C38 |
2.6 |
359.4 |
| C32 |
C31 |
C39 |
H25 |
182.7 |
179.7 |
| O01 |
C02 |
C03 |
N30 |
178.7 |
179.8 |
| C09 |
C03 |
C02 |
H1 |
103.7 |
120.6 |
| C03 |
C02 |
N30 |
H20 |
356.5 |
5.2 |
| C02 |
C03 |
C04 |
N06 |
191.3 |
295.7 |
| C02 |
C03 |
C04 |
C05 |
354.5 |
55.6 |
| C04 |
C03 |
C02 |
H1 |
257.8 |
239.7 |
| C02 |
C03 |
C04 |
H2 |
92.7 |
175.8 |
| O01 |
C02 |
N30 |
C03 |
181.4 |
180.2 |
| N30 |
C02 |
C03 |
C04 |
304.4 |
265.7 |
| N30 |
C02 |
C03 |
H1 |
46.6 |
26.0 |
| C31 |
N30 |
C02 |
H20 |
180.0 |
179.9 |
| C33 |
C37 |
C38 |
N36 |
180.0 |
179.9 |
| C31 |
C39 |
C38 |
C37 |
358.7 |
0.6 |
| C39 |
C38 |
C37 |
H24 |
180.0 |
179.7 |
| C37 |
C38 |
C39 |
H25 |
178.7 |
180.3 |
| C13 |
N14 |
C15 |
C16 |
288.4 |
180.0 |
| C15 |
N14 |
C13 |
H10 |
180.0 |
180.1 |
| C13 |
N14 |
C15 |
H11 |
48.7 |
299.9 |
| C13 |
N14 |
C15 |
H12 |
168.1 |
60.0 |
| N08 |
C07 |
N06 |
H6 |
180.1 |
180.5 |
| C09 |
C03 |
C04 |
H1 |
255.9 |
240.1 |
| C04 |
C03 |
C02 |
N30 |
304.4 |
265.7 |
| C02 |
C03 |
C04 |
H1 |
102.0 |
120.3 |
| C05 |
C04 |
C03 |
N06 |
163.2 |
119.9 |
| N06 |
C04 |
C03 |
H2 |
98.6 |
119.9 |
| C03 |
C04 |
N06 |
H6 |
187.4 |
150.9 |
| C05 |
C04 |
C03 |
H2 |
261.8 |
239.8 |
| C03 |
C04 |
C05 |
H3 |
180.0 |
61.2 |
| C03 |
C04 |
C05 |
H4 |
300.0 |
181.2 |
| C03 |
C04 |
C05 |
H5 |
60.0 |
301.3 |
| C02 |
N30 |
C31 |
H20 |
180.0 |
180.1 |
| C37 |
C38 |
C39 |
C31 |
358.7 |
0.6 |
| C39 |
C31 |
N30 |
H20 |
339.4 |
143.6 |
| C31 |
C39 |
C38 |
H24 |
178.8 |
180.4 |
| C38 |
C39 |
C31 |
H25 |
180.0 |
179.7 |
| C37 |
C38 |
C39 |
H24 |
180.0 |
180.3 |
| C31 |
C39 |
C38 |
H25 |
180.0 |
180.3 |
| C13 |
N14 |
C15 |
H10 |
180.0 |
179.9 |
| N14 |
C15 |
C16 |
O23 |
199.5 |
270.0 |
| C16 |
C15 |
N14 |
H11 |
239.7 |
240.0 |
| C16 |
C15 |
N14 |
H12 |
120.3 |
120.0 |
| H11 |
C15 |
N14 |
H12 |
240.6 |
240.0 |
| O29 |
C07 |
N06 |
H6 |
359.9 |
0.7 |
| C07 |
N06 |
C04 |
H2 |
106.0 |
90.9 |
| C04 |
N06 |
C07 |
H6 |
180.0 |
179.9 |
| C21 |
O20 |
C19 |
H13 |
327.9 |
60.0 |
| C21 |
O20 |
C19 |
H14 |
88.5 |
300.0 |
| C03 |
C04 |
N06 |
C05 |
163.5 |
119.9 |
| N06 |
C04 |
C03 |
H1 |
89.3 |
175.4 |
| C03 |
C04 |
N06 |
H2 |
261.5 |
240.1 |
| C07 |
N06 |
C04 |
H6 |
180.0 |
180.1 |
| C05 |
C04 |
N06 |
H2 |
98.0 |
120.2 |
| N06 |
C04 |
C05 |
H3 |
343.5 |
180.8 |
| N06 |
C04 |
C05 |
H4 |
103.4 |
300.8 |
| N06 |
C04 |
C05 |
H5 |
223.5 |
60.9 |
| C03 |
C04 |
C05 |
N06 |
196.5 |
240.4 |
| C05 |
C04 |
C03 |
H1 |
252.5 |
295.3 |
| C03 |
C04 |
C05 |
H2 |
98.3 |
120.2 |
| N06 |
C04 |
C05 |
H2 |
261.8 |
239.8 |
| C05 |
C04 |
N06 |
H6 |
24.0 |
31.0 |
| H3 |
C05 |
C04 |
H4 |
240.0 |
240.0 |
| H3 |
C05 |
C04 |
H5 |
120.0 |
119.9 |
| H4 |
C05 |
C04 |
H5 |
240.0 |
239.9 |
| C16 |
C15 |
N14 |
H10 |
108.4 |
0.0 |
| N14 |
C15 |
C16 |
H11 |
120.3 |
120.0 |
| N14 |
C15 |
C16 |
H12 |
239.7 |
240.0 |
| N17 |
C16 |
C15 |
O23 |
180.4 |
180.3 |
| C15 |
C16 |
O23 |
N22 |
180.1 |
179.8 |
| H11 |
C15 |
C16 |
H12 |
119.5 |
120.0 |
| C15 |
C16 |
N17 |
O23 |
179.7 |
179.8 |
| N17 |
C16 |
C15 |
H11 |
259.6 |
330.3 |
| N17 |
C16 |
C15 |
H12 |
140.1 |
210.3 |
| N17 |
C16 |
O23 |
N22 |
359.8 |
359.6 |
| C18 |
N17 |
C16 |
O23 |
0.4 |
0.2 |
| C19 |
C18 |
N17 |
N22 |
180.3 |
180.1 |
| O20 |
C19 |
C18 |
N22 |
302.0 |
270.0 |
| H13 |
C19 |
O20 |
H14 |
239.4 |
120.0 |
| O23 |
C16 |
C15 |
H11 |
79.2 |
150.0 |
| O23 |
C16 |
C15 |
H12 |
319.8 |
30.0 |
| N17 |
C18 |
C19 |
N22 |
179.7 |
179.9 |
| C16 |
O23 |
N22 |
C18 |
0.0 |
0.4 |
| H1 |
C03 |
C02 |
N30 |
46.6 |
26.0 |
| C02 |
C03 |
H1 |
C04 |
244.7 |
239.7 |
| H1 |
C03 |
C04 |
N06 |
89.3 |
175.4 |
| H1 |
C03 |
C04 |
C05 |
252.5 |
295.3 |
| H1 |
C03 |
C04 |
H2 |
350.7 |
55.5 |
| C03 |
C04 |
H2 |
N06 |
120.5 |
119.6 |
| C03 |
C04 |
H2 |
C05 |
239.4 |
239.8 |
| H2 |
C04 |
C03 |
H1 |
350.7 |
55.5 |
| C05 |
C04 |
H2 |
N06 |
241.1 |
239.8 |
| H2 |
C04 |
N06 |
H6 |
285.9 |
270.8 |
| H2 |
C04 |
C05 |
H3 |
81.7 |
301.0 |
| H2 |
C04 |
C05 |
H4 |
201.6 |
61.0 |
| H2 |
C04 |
C05 |
H5 |
321.7 |
181.1 |
| H3 |
C05 |
C04 |
N06 |
343.5 |
180.8 |
| H3 |
C05 |
C04 |
H2 |
81.7 |
301.0 |
| C04 |
C05 |
H3 |
H4 |
120.0 |
120.0 |
| C04 |
C05 |
H3 |
H5 |
240.0 |
240.0 |
| H4 |
C05 |
H3 |
H5 |
120.0 |
120.0 |
| H4 |
C05 |
C04 |
N06 |
103.4 |
300.8 |
| H4 |
C05 |
C04 |
H2 |
201.6 |
61.0 |
| C04 |
C05 |
H4 |
H3 |
240.0 |
240.0 |
| C04 |
C05 |
H4 |
H5 |
120.0 |
120.1 |
| H3 |
C05 |
H4 |
H5 |
240.0 |
240.1 |
| H5 |
C05 |
C04 |
N06 |
223.5 |
60.9 |
| H5 |
C05 |
C04 |
H2 |
321.7 |
181.1 |
| C04 |
C05 |
H5 |
H3 |
120.0 |
119.9 |
| C04 |
C05 |
H5 |
H4 |
240.0 |
239.9 |
| H3 |
C05 |
H5 |
H4 |
120.0 |
120.0 |
| H6 |
N06 |
C04 |
H2 |
285.9 |
270.8 |
| H7 |
N08 |
C07 |
O29 |
359.8 |
359.3 |
| H8 |
C09 |
N08 |
H7 |
298.2 |
329.0 |
| H8 |
C09 |
C03 |
H1 |
145.4 |
64.8 |
| C13 |
N14 |
H10 |
C15 |
180.0 |
180.1 |
| H10 |
N14 |
C15 |
C16 |
108.4 |
0.0 |
| H10 |
N14 |
C15 |
H11 |
228.7 |
120.0 |
| H10 |
N14 |
C15 |
H12 |
348.1 |
240.1 |
| N14 |
C15 |
H11 |
C16 |
238.4 |
240.0 |
| H11 |
C15 |
N14 |
H10 |
228.7 |
120.0 |
| N14 |
C15 |
H11 |
H12 |
119.2 |
120.0 |
| H11 |
C15 |
C16 |
O23 |
79.2 |
150.0 |
| C16 |
C15 |
H11 |
H12 |
240.8 |
240.0 |
| N14 |
C15 |
H12 |
C16 |
121.6 |
120.0 |
| H12 |
C15 |
N14 |
H10 |
348.1 |
240.1 |
| N14 |
C15 |
H12 |
H11 |
240.8 |
240.0 |
| H12 |
C15 |
C16 |
O23 |
319.8 |
30.0 |
| C16 |
C15 |
H12 |
H11 |
119.2 |
120.0 |
| O20 |
C19 |
H13 |
H14 |
120.8 |
239.9 |
| H13 |
C19 |
C18 |
N22 |
182.3 |
30.1 |
| O20 |
C19 |
H14 |
H13 |
239.2 |
120.1 |
| H14 |
C19 |
C18 |
N22 |
61.8 |
150.0 |
| H16 |
C21 |
H15 |
H17 |
120.0 |
119.9 |
| H15 |
C21 |
H16 |
H17 |
240.0 |
240.0 |
| H15 |
C21 |
H17 |
H16 |
120.0 |
120.0 |
| H18 |
C27 |
C28 |
H19 |
0.1 |
359.4 |
| H19 |
C28 |
C27 |
H18 |
0.1 |
359.4 |
| H21 |
C32 |
C31 |
C39 |
177.3 |
180.3 |
| H22 |
C34 |
N35 |
N36 |
180.1 |
180.0 |
| H22 |
C34 |
N35 |
H23 |
0.1 |
0.1 |
| H22 |
C34 |
C33 |
C37 |
179.9 |
180.0 |
| C34 |
N35 |
H23 |
N36 |
180.0 |
179.9 |
| H23 |
N35 |
C34 |
H22 |
0.1 |
0.1 |
| H23 |
N35 |
N36 |
C37 |
179.9 |
179.9 |
| C37 |
C38 |
H24 |
C39 |
180.0 |
179.7 |
| H24 |
C38 |
C39 |
H25 |
358.7 |
0.0 |
| C31 |
C39 |
H25 |
C38 |
180.0 |
179.7 |
| H25 |
C39 |
C38 |
H24 |
358.7 |
0.0 |